To explore the inhibitory activity of psoralen against SARS-CoV-2 main protease (Mpro) and RNA polymerase (RdRp).
Crystal structures of Mpro and RdRp were obtained. Molecular docking technology was employed to study the interaction mode of psoralen with the active sites of both enzymes. The inhibitory activity of psoralen against Mpro was tested using an in vitro fluorescence polarization model, while the inhibitory activity against RdRp was tested using a cell-level SARS-CoV-2 RNA polymerase catalytic reaction system.
Psoralen could enter the active sites of Mpro and RdRp and interact with surrounding amino acids, with the binding process releasing free energy of-5.8 kcal/mol and-7.8 kcal/mol, respectively. In the Mpro fluorescence polarization model test, psoralen showed no inhibitory activity against the target enzyme at concentrations of 50, 100 and 200 μmol/L. In the RdRp inhibition test, psoralen showed inhibition rates of 7.36%±4.26%, 16.82%±6.04% and 46.07%±9.01% at concentrations of 10, 25 and 50 μmol/L, respectively.
The small molecule psoralen has no inhibitory activity against Mpro, but has certain inhibitory activity against RdRp.
| 科 Family | 属数 Number of genus | 种数 Number of species | 占总种数比例 Percentage of total species (%) | 属 Genus | 种数 Number of species | 占总种数比例 Percentage of total species (%) |
|---|---|---|---|---|---|---|
| 鹅膏菌科Amanitaceae | 2 | 11 | 5.26 | 鹅膏菌属 Amanita | 10 | 4.78 |
| 小菇科 Mycenaceae | 2 | 12 | 5.74 | 丝盖伞属 Inocybe | 5 | 2.39 |
| 多孔菌科 Polyporaceae | 8 | 14 | 6.70 | 蜡蘑属 Laccaria | 5 | 2.39 |
| 红菇科 Russulaceae | 3 | 23 | 11.00 | 小皮伞属 Marasmius | 6 | 2.87 |
| 小菇属 Mycena | 11 | 5.26 | ||||
| 光柄菇属 Pluteus | 5 | 2.39 | ||||
| 红菇属 Russula | 17 | 8.13 | ||||
| 栓菌属 Trametes | 5 | 2.39 |