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Application of Bayesian inference in soil microbial biogeography
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Science & Technology Review | 2022, 40(3) : 112 - 120
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Science & Technology Review | 2022, 40(3): 112-120
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Application of Bayesian inference in soil microbial biogeography
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LIU Xu1,2, MA Yuying1, GAO Guifeng1, FAN Kunkun1, YANG Teng1, CHU Haiyan1,2
Affiliations
    1. State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China;
    2. University of the Chinese Academy of Sciences, Beijing 100049, China
Published: 2022-02-13 doi: 10.3981/j.issn.1000-7857.2022.03.010
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Microbial biogeography mainly focuses on the distribution patterns of microorganisms and their driving mechanisms,and currently classical frequency mathematical and statistical methods are widely used in this field.In recent years,Bayesian inference has been continuously applied as an important random simulation mathematical statistics method for soil microbial biogeographical study.In this paper,we briefly introduce the differences between Bayesian inference and classical frequency mathematical statistics,and highlight the basic analytical process of Bayesian inference in soil microbial biogeographical study in terms of model construction,model fitting,and model improvement.We also evaluate the advantages,application potentials and development directions of Bayesian inference in this field and demonstrate the Bayesian inference process using simulated data with island biogeography theory as the research framework.Finally,we give an outlook on the application prospects of Bayesian inference in soil microbial biogeography.We believe that Bayesian inference will become one of the important tools for studying complex data and conducting model simulations in soil microbial biogeography.
soil microbial biogeography  /  Bayesian inference  /  classical frequency statistics  /  Markov chain Monte Carlo sampling
LIU Xu, MA Yuying, GAO Guifeng, FAN Kunkun, YANG Teng, CHU Haiyan. Application of Bayesian inference in soil microbial biogeography[J]. Science & Technology Review, 2022 , 40 (3) : 112 -120 . DOI: 10.3981/j.issn.1000-7857.2022.03.010
Year 2022 volume 40 Issue 3
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doi: 10.3981/j.issn.1000-7857.2022.03.010
  • Receive Date:2021-07-19
  • Online Date:2022-03-25
  • Published:2022-02-13
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  • Received:2021-07-19
  • Revised:2021-11-22
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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