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Bioinformatics Analysis of Core Genes Associated with Cuproptosis in Alcoholic Liver Cirrhosis and Prediction of Traditional Chinese Medicine
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Runmeng YANG, Wenliang LYU
Acta Chinese Medicine | 2025, 40(12) : 2520 - 2529
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Acta Chinese Medicine | 2025, 40(12): 2520-2529
• Innovative Thinking and Technological Frontiers •
Bioinformatics Analysis of Core Genes Associated with Cuproptosis in Alcoholic Liver Cirrhosis and Prediction of Traditional Chinese Medicine
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Runmeng YANG, Wenliang LYU
Affiliations
  • Guang'anmen Hospital, China Academy of Chinese Medical Sciences, Beijing China 100053
Published: 2025-12-10 doi: 10.16368/j.issn.1674-8999.2025.12.394
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Objective:To screen differentially expressed genes associated with cuproptosis in alcoholic liver cirrhosis using bioinformatics methods,explore their mechanisms of action,and identify traditional Chinese medicines with potential therapeutic effects.Methods:Datasets of patients with alcoholic liver cirrhosis meeting the criteria were selected from the GEO database.Differentially expressed genes(DEGs)were identified using software analysis,followed by KEGG pathway analysis and protein-protein interaction(PPI)network analysis to screen key genes.Random forest and SVMmodels,commonly used in machine learning,were applied to study the key genes. In addition,literature was reviewed to obtain cuproptosis-related genes(CRGs).The DEGs and CRGs were intersected to identify core genes associated with cuproptosis,followed by GSEA enrichment analysis. Core genes retrieved from the Coremine database were used to predict therapeutic Chinese herbs.Results:By screening gene chips GSE167308 and GSE142530,278 DEGs were obtained.Through further selection via PPI and validation with GSE143318,10 key genes were identified.Literature review collected 38 CRGs,and the intersection yielded 2 cuproptosis core genes-CDKN2A(Cyclin-Dependent Kinase Inhibitor 2)and PLAT(Plasminogen Activator).GSEA analysis indicated that the core genes are closely associated with linoleic acid metabolism,amino acid biosynthesis,arginine biosynthesis,HIF-1 signaling pathway,phenylalanine metabolism,and others. Chinese herbs such as Huci(Indian damnacanthus herb),Fengfang(Honeycomb),Diren(Melastoma dode candrum lour),Xiazhicao(Lagopsis supina),Hudilong(Lumbricus)and Qishe(Agkistrodon acutus)were identified through database search,and the attributes of the herbs including their four Qi,five Flavor,and meridian tropism were summarized. Conclusion:CDKN2A and PLAT are core genes related to cuproptosis in alcoholic cirrhosis.Prediction identified 35 Chinese herbs,which may serve as potential treatments for alcoholic cirrhosis.

alcoholic cirrhosis  /  cuproptosis  /  differentially expressed gene  /  Chinese medicine prediction
杨润萌, 吕文良. 酒精性肝硬化相关铜死亡核心基因的生物信息学分析及中药预测. 中医学报, 2025 , 40 (12) : 2520 -2529 . DOI: 10.16368/j.issn.1674-8999.2025.12.394
Runmeng YANG, Wenliang LYU. Bioinformatics Analysis of Core Genes Associated with Cuproptosis in Alcoholic Liver Cirrhosis and Prediction of Traditional Chinese Medicine[J]. Acta Chinese Medicine, 2025 , 40 (12) : 2520 -2529 . DOI: 10.16368/j.issn.1674-8999.2025.12.394
Year 2025 volume 40 Issue 12
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doi: 10.16368/j.issn.1674-8999.2025.12.394
  • Receive Date:2025-06-13
  • Online Date:2026-10-10
  • Published:2025-12-10
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  • Received:2025-06-13
Affiliations
    Guang'anmen Hospital, China Academy of Chinese Medical Sciences, Beijing China 100053
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表12种不同金属材料的力学参数
科
Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)
属
Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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