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Whole Genome Sequencing and Gene Function Analysis of the Nitrite-Lowering Strain Levilactobacillus brevis JYX2
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Journal of Chinese Institute of Food Science and Technology | 2026, 26(1) : 281 - 291
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Journal of Chinese Institute of Food Science and Technology | 2026, 26(1): 281-291
分析与检测
Whole Genome Sequencing and Gene Function Analysis of the Nitrite-Lowering Strain Levilactobacillus brevis JYX2
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Published: 2026-01-31 doi: 10.16429/j.1009-7848.2026.01.025
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A nitrite-degrading strain, Levilactobacillus brevis JYX2, was isolated from naturally fermented sauerkraut in Northeast China, and its safety was evaluated through hemolysis test and antibiotic susceptibility test. To elucidate the genomic characteristics of L. brevis JYX2 and its nitrite degradation-related genes, Pacbio third-generation sequencing and Illumina second-generation sequencing technologies were employed for whole-genome sequencing. Based on the obtained sequences, gene prediction and functional annotation analysis were conducted through COG, GO, and KEGG databases. Meanwhile, the safety of L. brevis JYX2 was analyzed using the CARD and VFDB databases. The results showed that L. brevis JYX2 could degrade up to 98.72% of sodium nitrite in the culture medium after 24 h of incubation in MRS medium containing 100 μg/mL sodium nitrite. And the strain exhibited no hemolytic activity and demonstrated high sensitivity to antibiotics such as gentamicin, erythromycin, and chloramphenicol (with inhibition zone diameters ≥ 20 mm), indicating a favorable safety profile. The genome of L. brevis JYX2 was composed of a circular closed DNA and a circular plasmid, with a genome length of 2 567 154 bp and a GC content of 45.82%. A total of 2 485 coding genes, 65 tRNA genes, 15 rRNA genes, and 27 sRNAs were predicted. Furthermore, 1 926, 1 762, 1 823, 73, 180, 217 functional genes were annotated in COG, GO, KEGG, CAZY, CARD and VFDB databases, respectively. Further analysis revealed that no nitrite reductase gene was detected in the genome of L. brevis JYX2, suggesting that its nitrite degradation may rely on other enzymes or mechanisms. Additionally, predictive analyses of virulence and resistance genes further confirmed the safety of the L. brevis JYX2 strain. In conclusion, L. brevis JYX2 exhibits both functional efficacy and safety, making it a suitable candidate as a fermentation agent for nitrite reduction in fermented foods.
Levilactobacillus brevis  /  whole genome sequencing  /  sodium nitrite  /  gene function annotation  /  sauerkraut
. Whole Genome Sequencing and Gene Function Analysis of the Nitrite-Lowering Strain Levilactobacillus brevis JYX2[J]. Journal of Chinese Institute of Food Science and Technology, 2026 , 26 (1) : 281 -291 . DOI: 10.16429/j.1009-7848.2026.01.025
Year 2026 volume 26 Issue 1
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doi: 10.16429/j.1009-7848.2026.01.025
  • Receive Date:2024-12-22
  • Online Date:2026-05-27
  • Published:2026-01-31
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  • Received:2024-12-22
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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