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Protein language model-guided enhancement of the catalytic activity of human arginase 1
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Li-xia ZONG1, Ke-qing YAN1, Zhi-fei ZHANG1, Shuai FAN2, *, De-hong YU1, *, Zhao-yong YANG2
Acta Pharmaceutica Sinica | 2026, 61(7) : 2795 - 2800
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Acta Pharmaceutica Sinica | 2026, 61(7): 2795-2800
• Original Articles •
Protein language model-guided enhancement of the catalytic activity of human arginase 1
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Li-xia ZONG1, Ke-qing YAN1, Zhi-fei ZHANG1, Shuai FAN2, *, De-hong YU1, *, Zhao-yong YANG2
Affiliations
  • 1School of Pharmacy, North China University of Science and Technology, Tangshan 063000, China
  • 2Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, China
Published: 2026-07-12 doi: 10.16438/j.0513-4870.2026-0246
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Recombinant human arginase 1 (rhArg1) has significant therapeutic potential for the treatment of arginase 1 deficiency (ARG1-D) and arginine-auxotrophic cancers. However, its relatively low catalytic efficiency and limited in vivo stability restrict its clinical application. To enhance the catalytic performance of rhArg1, we employed the protein language model SaProt to perform zero-shot global mutational effect prediction across the entire rhArg1 sequence. Based on the predicted scores, the top 37 candidate variants were selected for experimental validation. Enzyme activity assays revealed that 16 of the 37 variants exhibited higher activity than the wild-type (WT) enzyme. Among them, the V30A, C45F, A56V, and H312P variants showed the most pronounced improvements, with catalytic activities increased by 33%, 23%, 22%, and 90%, respectively, compared with WT. Further kinetic characterization demonstrated that the H312P variant increased by 131% in catalytic efficiency (kcat/KM) relative to WT. These results indicate that the protein language model SaProt can effectively guide the rational engineering of arginase. The high-activity variants identified in this study provide promising candidate molecules for the treatment of ARG1-D and arginine-auxotrophic cancers.

human arginase 1  /  deep learning  /  protein language model  /  enzyme dynamics
宗丽霞, 严珂庆, 张志斐, 樊帅, 于德红, 杨兆勇. 蛋白质语言模型用于提高人精氨酸酶1的催化活性. 药学学报, 2026 , 61 (7) : 2795 -2800 . DOI: 10.16438/j.0513-4870.2026-0246
Li-xia ZONG, Ke-qing YAN, Zhi-fei ZHANG, Shuai FAN, De-hong YU, Zhao-yong YANG. Protein language model-guided enhancement of the catalytic activity of human arginase 1[J]. Acta Pharmaceutica Sinica, 2026 , 61 (7) : 2795 -2800 . DOI: 10.16438/j.0513-4870.2026-0246
Year 2026 volume 61 Issue 7
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98
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Article Info
doi: 10.16438/j.0513-4870.2026-0246
  • Receive Date:2026-03-08
  • Online Date:2026-09-21
  • Published:2026-07-12
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  • Received:2026-03-08
  • Revised:2026-05-21
Affiliations
    1School of Pharmacy, North China University of Science and Technology, Tangshan 063000, China
    2Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, China
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表12种不同金属材料的力学参数
科
Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)
属
Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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