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The characteristics of complete chloroplast genome sequence and phylogenetic analysis of Dendrobium moniliforme
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Li-wei WU1, 3, Ying-xian CUI1, 3, Li-ping NIE1, 3, Zhi-chao XU1, 3, Yu WANG1, Jing-yuan SONG1, 3, Lian-kui JIAO2, *, Hui YAO1, 3, *
Acta Pharmaceutica Sinica | 2020, 55(5) : 1056 - 1066
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Acta Pharmaceutica Sinica | 2020, 55(5): 1056-1066
• Original Articles •
The characteristics of complete chloroplast genome sequence and phylogenetic analysis of Dendrobium moniliforme
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Li-wei WU1, 3, Ying-xian CUI1, 3, Li-ping NIE1, 3, Zhi-chao XU1, 3, Yu WANG1, Jing-yuan SONG1, 3, Lian-kui JIAO2, *, Hui YAO1, 3, *
Affiliations
  • 1. Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100193, China
  • 2. China National Traditional Chinese Medicine Co., Ltd., Beijing 102600, China
  • 3. Engineering Research Center of Chinese Medicine Resources, Ministry of Education, Beijing 100193, China
Published: 2020-05-12 doi: 10.16438/j.0513-4870.2019-0940
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Dendrobium moniliforme is an important source of Dendrobii Caulis and one of the main sources of authentic Fengdou. The complete chloroplast genome of D. moniliforme was sequenced using Illumina Hiseq technology and its gene map and genomic structure were analyzed. Then comparative and phylogenetic analysis of the complete chloroplast genomes of D. moniliforme and its related species were conducted. The chloroplast genome of D. moniliforme was 150 754 bp in length and had a typical quadripartite structure with a large single copy (LSC, 84 818 bp), a small single copy (SSC, 14 124 bp) and two inverted repeats (IRs, 25 906 bp each). A total of 123 chloroplast genes were annotated, including 77 protein-coding genes, 38 tRNA genes and 8 rRNA genes, of which 17 genes contained introns. Bioinformatics analysis identified 53 SSR sites, most of which had A-T base preference. A phylogenetic tree was constructed using the chloroplast genome sequences of 33 Dendrobium species. The results showed that Dendrobium complex species were clustered in a single large branch, indicating that they were closely related. This study provides a scientific basis for the identification of D. moniliforme and the phylogenetic relationship of D. moniliforme complex species necessary for Herbgenomics research.

Dendrobium moniliforme  /  chloroplast genome  /  D.moniliforme complex  /  phylogenetic  /  Herbgenomics
Li-wei WU, Ying-xian CUI, Li-ping NIE, Zhi-chao XU, Yu WANG, Jing-yuan SONG, Lian-kui JIAO, Hui YAO. The characteristics of complete chloroplast genome sequence and phylogenetic analysis of Dendrobium moniliforme[J]. Acta Pharmaceutica Sinica, 2020 , 55 (5) : 1056 -1066 . DOI: 10.16438/j.0513-4870.2019-0940
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Article Info
doi: 10.16438/j.0513-4870.2019-0940
  • Receive Date：2019-11-21
  • Online Date：2026-01-21
  • Published：2020-05-12
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History
  • Received：2019-11-21
  • Revised：2020-03-26
Funding
Affiliations
    1. Key Laboratory of Bioactive Substances and Resources Utilization of Chinese Herbal Medicine, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100193, China
    2. China National Traditional Chinese Medicine Co., Ltd., Beijing 102600, China
    3. Engineering Research Center of Chinese Medicine Resources, Ministry of Education, Beijing 100193, China
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表12种不同金属材料的力学参数
科
Family		 属数
Number of
genus		 种数
Number of
species		 占总种数比例
Percentage of
total species (%)		 属
Genus		 种数
Number of
species		 占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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