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Evaluation of genetic diversity and population structure of genus Tripterygium based on SSR markers
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Na LI1, Yuan-yuan YAO1, Yi-long CHEN1, Xu-ming LIANG1, Ding-ding ZHENG2, Xiao-mei ZHANG1, *, Da-jian YANG1, *
Acta Pharmaceutica Sinica | 2017, 52(1) : 153 - 161
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Acta Pharmaceutica Sinica | 2017, 52(1): 153-161
ORIGINAL ARTICLES
Evaluation of genetic diversity and population structure of genus Tripterygium based on SSR markers
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Na LI1, Yuan-yuan YAO1, Yi-long CHEN1, Xu-ming LIANG1, Ding-ding ZHENG2, Xiao-mei ZHANG1, *, Da-jian YANG1, *
Affiliations
  • 1. Chongqing Academy of Chinese Materia Medica, Chongqing 400065, China
  • 2. College of Pharmacy, Southwest University, Chongqing 400715, China
Published: 2017-01-12 doi: 10.16438/j.0513-4870.2016-0493
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The genus Tripterygium is an immune suppressor in the Chinese traditional medicines. Due to the habitat destruction and anthropogenic over-exploitation, the wild genus Tripterygium plants have decreased dramatically in recent years or even been endangered. It is critical to evaluate and protect genus Tripterygium wild resource. In this research, simple sequence repeat (SSR) molecular markers were applied to the investigation of the genetic diversity and genetic structure of 28 populations for genus Tripterygium (396 samples from 9 provinces in China). We found a high level of genetic diversity (percentage of polymorphic loci PPL=77.29%, Shannon's information index I=0.639 4; Nei's expected heterozygosity H=0.359 9) and high genetic differentiation among the populations (gene flow Nm=0.228 7). Based on Nei's genetic distance, the phylogenic tree of populations was constructed and 28 populations were divided into 6 clusters according to STRUCTURE clustering analysis. T. hypoglaucumwas was mainly divided into 3 clusters, including Sichuan, Yunnan and GuizhouChongqing. T. regelii was separated to cluster 4, while T. wilfordii was divided into two clusters:the transition type LQ and NY were divided into cluster 5, and the others were in cluster 6. These results provide a theory basis for the conservation of wild resource, research of genetic polymorphism and molecular marker for assisted breeding of genus Tripterygium.

genus Tripterygium  /  simple sequence repeat  /  genetic diversity  /  population genetic structure  /  genetic resource conservation
Na LI, Yuan-yuan YAO, Yi-long CHEN, Xu-ming LIANG, Ding-ding ZHENG, Xiao-mei ZHANG, Da-jian YANG. Evaluation of genetic diversity and population structure of genus Tripterygium based on SSR markers[J]. Acta Pharmaceutica Sinica, 2017 , 52 (1) : 153 -161 . DOI: 10.16438/j.0513-4870.2016-0493
Year 2017 volume 52 Issue 1
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Article Info
doi: 10.16438/j.0513-4870.2016-0493
  • Receive Date:2016-05-24
  • Online Date:2026-01-14
  • Published:2017-01-12
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  • Received:2016-05-24
  • Revised:2016-07-06
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    1. Chongqing Academy of Chinese Materia Medica, Chongqing 400065, China
    2. College of Pharmacy, Southwest University, Chongqing 400715, China
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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