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Characterization and phylogenetic analysis of the complete chloroplast genome of Lycopus europaeus
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Qing DU1, 2, 3, *, Li-qiang WANG4, Zhuo-er CHEN2, 5, Mei JIANG6, Hai-mei CHEN2, Jing ZENG2, 5, Bin WANG5, *, Chang LIU2
Acta Pharmaceutica Sinica | 2022, 57(7) : 2206 - 2215
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Acta Pharmaceutica Sinica | 2022, 57(7): 2206-2215
• Original Articles •
Characterization and phylogenetic analysis of the complete chloroplast genome of Lycopus europaeus
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Qing DU1, 2, 3, *, Li-qiang WANG4, Zhuo-er CHEN2, 5, Mei JIANG6, Hai-mei CHEN2, Jing ZENG2, 5, Bin WANG5, *, Chang LIU2
Affiliations
  • 1. Key Laboratory of Medicinal Plant Resources of Qinghai-Tibetan Plateau in Qinghai Province, College of Pharmacy, Qinghai Minzu University, Xining 810007, China
  • 2. Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100193, China
  • 3. Fresh Sky-Right (Beijing) International Science and Technology Co. Ltd., Beijing 100097, China
  • 4. College of Pharmacy, Heze University, Heze 274015, China
  • 5. College of Pharmacy, Xiangnan University, Chenzhou 423099, China
  • 6. School of Pharmaceutical Sciences, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250200, China
Published: 2022-07-12 doi: 10.16438/j.0513-4870.2022-0208
Outline
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We intend to study the structural characteristics of Lycopus europaeus Linn. chloroplast genome and compare the evolutionary relationship of species from Lamiaceae with similar medicinal effects. The total DNA of Lycopus europaeus was sequenced using the Illumina Hiseq 4000 Sequencing platform and was assembled using NOVOplasty software. And then we annotated and analyzed the genome using the CPGAVAS2 online tool. We constructed the phylogenetic tree using the Stellera chamaejasme and Potentilla chinensis as the outgroup. The whole length of Lycopus europaeus chloroplast genome was 152 085 bp. A total of 132 genes were annotated including 88 protein-coding genes, 8 rRNA genes and 36 tRNA genes. Among them, 8 protein-coding genes (ndhB, rps7, rps12, rps19, rpl2, rpl23, ycf2, ycf15), 7 tRNA coding genes (trnM-CAU, trnL CAA, trnN-GUU, trnE-UUC, trnV-GAC, trnA-UGC, trnR-ACG) and 4 rRNA coding genes (rrn16s, rrn23s, rrn4.5s, rrn5s) are located in the IR region. There are 13 protein coding genes [rps16, rps19 (×2), atpF, rpoC1, rpl2 (×2), petB, petD, rpl16, ndhB (×2), ndhA] each contains one intron, two protein-coding genes (ycf3, clpP) each contain two introns, and 8 tRNA coding genes each contain one intron. A total of 34 SSRs were detected in the chloroplast genome of Lycopus europaeus. Phylogenetic analysis revealed that two species in the Lycopus genus, four species in the Dracocephalum genus, Glechoma longituba, two species in the Mentha genus and Prunella vulgari, in total 10 species are most related. The complete genome sequence of Lycopus europaeus was obtained and analyzed, which clarified the evolutional relationship between the species of Lycopus europaeus and in the Lamiaceae family.

Lamiaceae  /  Lycopus europaeus  /  L. lucidus Turcz. var. hirtus Regel  /  chloroplast genome  /  sequence characteristics  /  repeats sequence  /  phylogenetic evolution
Qing DU, Li-qiang WANG, Zhuo-er CHEN, Mei JIANG, Hai-mei CHEN, Jing ZENG, Bin WANG, Chang LIU. Characterization and phylogenetic analysis of the complete chloroplast genome of Lycopus europaeus[J]. Acta Pharmaceutica Sinica, 2022 , 57 (7) : 2206 -2215 . DOI: 10.16438/j.0513-4870.2022-0208
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Article Info
doi: 10.16438/j.0513-4870.2022-0208
  • Receive Date：2022-02-18
  • Online Date：2025-12-23
  • Published：2022-07-12
Article Data
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History
  • Received：2022-02-18
  • Revised：2022-03-31
Funding
Affiliations
    1. Key Laboratory of Medicinal Plant Resources of Qinghai-Tibetan Plateau in Qinghai Province, College of Pharmacy, Qinghai Minzu University, Xining 810007, China
    2. Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100193, China
    3. Fresh Sky-Right (Beijing) International Science and Technology Co. Ltd., Beijing 100097, China
    4. College of Pharmacy, Heze University, Heze 274015, China
    5. College of Pharmacy, Xiangnan University, Chenzhou 423099, China
    6. School of Pharmaceutical Sciences, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250200, China
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表12种不同金属材料的力学参数
科
Family		 属数
Number of
genus		 种数
Number of
species		 占总种数比例
Percentage of
total species (%)		 属
Genus		 种数
Number of
species		 占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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