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Deep learning-based de novo drug design: principles, tools and practice
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Tao SHEN, Dong-mei WANG, Song WU, Jian-dong JIANG, Jie XIA*
Acta Pharmaceutica Sinica | 2023, 58(9) : 2610 - 2622
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Acta Pharmaceutica Sinica | 2023, 58(9): 2610-2622
Deep learning-based de novo drug design: principles, tools and practice
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Tao SHEN, Dong-mei WANG, Song WU, Jian-dong JIANG, Jie XIA*
Affiliations
  • State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, China
Published: 2023-09-12 doi: 10.16438/j.0513-4870.2022-1453
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Design of structurally-novel drug molecules with deep learning can overcome the technical bottleneck of classical computer-aided drug design. It has become the frontier of new technique research on drug design, and has shown great potential in drug research and development practice. This review starts from the basic principles of deep learning-driven de novo drug design, goes on with the brief introduction to deep molecular generation techniques as well as computational tools and the analysis on representative successful cases, and eventually provides our perspective for future direction and application prospect about this technique. This review will provide ideas on new technique research and references for new drug research and development practice to which this technique is applied.

new drug research and development  /  molecular informatics  /  de novo drug design  /  artificial intelligence  /  deep learning
Tao SHEN, Dong-mei WANG, Song WU, Jian-dong JIANG, Jie XIA. Deep learning-based de novo drug design: principles, tools and practice[J]. Acta Pharmaceutica Sinica, 2023 , 58 (9) : 2610 -2622 . DOI: 10.16438/j.0513-4870.2022-1453
Year 2023 volume 58 Issue 9
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Article Info
doi: 10.16438/j.0513-4870.2022-1453
  • Receive Date:2023-01-03
  • Online Date:2025-11-21
  • Published:2023-09-12
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  • Received:2023-01-03
  • Revised:2023-02-13
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    State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100050, China
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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