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Genome-wide analysis and cadmium-induced expression profiling of the CDPK gene family in Salvia miltiorrhiza
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Li-jun LIU1, 2, Wen-ying ZHANG1, 2, Hong-mei LUO1, 2, *
Acta Pharmaceutica Sinica | 2026, 61(3) : 961 - 972
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Acta Pharmaceutica Sinica | 2026, 61(3): 961-972
• Original Articles •
Genome-wide analysis and cadmium-induced expression profiling of the CDPK gene family in Salvia miltiorrhiza
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Li-jun LIU1, 2, Wen-ying ZHANG1, 2, Hong-mei LUO1, 2, *
Affiliations
  • 1State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-Di Herbs, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China
  • 2Engineering Research Center of Chinese Medicine Resource, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China
Published: 2026-03-12 doi: 10.16438/j.0513-4870.2025-1114
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Calcium-dependent protein kinases (CDPKs) serve as crucial calcium sensors in plants, playing key roles in regulating plant growth, development, and stress responses. In this study, a total of 26 Salvia miltiorrhiza CDPK (SmCDPK) genes were identified through genome-wide analysis, which were unevenly distributed across seven chromosomes. Phylogenetic analysis grouped the 26 SmCDPKs into four distinct subfamilies (Ⅰ-Ⅳ), and systematic predictions were conducted for their physicochemical properties, secondary structures, and subcellular localization. Promoter analysis uncovered multiple cis-elements associated with light, phytohormones, and abiotic stress. Transcriptome profiling under 50 and 100 μmol·L-1 cadmium (Cd) stress demonstrated tissue-specific expression patterns of these SmCDPK genes. Notably, SmCDPK18 was upregulated in both roots and leaves under Cd exposure, suggesting involvement in Cd detoxification and oxidative regulation. In contrast, SmCDPK2, SmCDPK8, and SmCDPK22 were significantly downregulated in roots. These expression patterns were confirmed by quantitative reverse-transcription PCR (qRT-PCR). This study provides insight into the CDPK gene family in S. miltiorrhiza and its potential roles in cadmium stress response, offering valuable theoretical support and key gene resources for future molecular breeding and environmental adaptation studies in medicinal plants.

calcium-dependent protein kinase  /  Salvia miltiorrhiza  /  cadmium stress  /  gene family  /  expression analysis
刘俐君, 张文颖, 罗红梅. 丹参钙依赖蛋白激酶(CDPK) 家族鉴定及其镉胁迫响应研究. 药学学报, 2026 , 61 (3) : 961 -972 . DOI: 10.16438/j.0513-4870.2025-1114
Li-jun LIU, Wen-ying ZHANG, Hong-mei LUO. Genome-wide analysis and cadmium-induced expression profiling of the CDPK gene family in Salvia miltiorrhiza[J]. Acta Pharmaceutica Sinica, 2026 , 61 (3) : 961 -972 . DOI: 10.16438/j.0513-4870.2025-1114
Year 2026 volume 61 Issue 3
184
87
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Article Info
doi: 10.16438/j.0513-4870.2025-1114
  • Receive Date:2025-09-18
  • Online Date:2026-09-21
  • Published:2026-03-12
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  • Received:2025-09-18
  • Revised:2025-12-08
Affiliations
    1State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-Di Herbs, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China
    2Engineering Research Center of Chinese Medicine Resource, Ministry of Education, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100193, China
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表12种不同金属材料的力学参数
科
Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)
属
Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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