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Study on the catalytic mechanism of triterpene C-29 carboxylases from Tripterygium wilfordii based on directed evolution
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Pan-ting LIU1, Yi-feng ZHANG2, Yuan LIU1, Jie GAO1, Lin MA1, Xiao-yi WU1, Ya-ting HU1, Ping SU2, Shi-jun YUAN2, Xia-nan ZHANG1, *, Wei GAO1, *
Acta Pharmaceutica Sinica | 2024, 59(6) : 1883 - 1893
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Acta Pharmaceutica Sinica | 2024, 59(6): 1883-1893
Original Articles
Study on the catalytic mechanism of triterpene C-29 carboxylases from Tripterygium wilfordii based on directed evolution
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Pan-ting LIU1, Yi-feng ZHANG2, Yuan LIU1, Jie GAO1, Lin MA1, Xiao-yi WU1, Ya-ting HU1, Ping SU2, Shi-jun YUAN2, Xia-nan ZHANG1, *, Wei GAO1, *
Affiliations
  • 1. School of Traditional Chinese Medicine, Capital Medical University, Beijing 100069, China
  • 2. National Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing 100700, China
Published: 2024-06-12 doi: 10.16438/j.0513-4870.2023-1325
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Celastrol and wilforlide A are the main active triterpenoids of the traditional Chinese medicine Lei Gong Teng, which have anti-tumour, anti-inflammatory and immunosuppressive activities, and are the material basis for the clinical efficacy of Lei Gong Teng-related Chinese medicinal preparations. By analysing the biosynthetic pathway of active ingredients, optimizing genetic elements and utilizing "cell factory" to produce triterpenoids heterologously will be an effective way to obtain from Tripterygium wilfordii in the future in a "low-cost and high-efficient" manner. CYP712Ks are the first cytochrome P450s involved in the skeleton modification of friedelane-type and oleanane-type triterpenoids in T. wilfordii, and they can catalyse the generation of polpunonic acid from friedelin and 3-epi-katonic acid from β-amyrin by carboxylation at C-29 position. In this study, four multifunctional TwCYP712K1/2/3/5 were used to clarify the catalytic function and substrate selection preference using in vivo functional characterization in Saccharomyces cerevisiae. The spatial structure of the protein-substrate binding was clarified through homology modeling and molecular docking, and then the differential amino acids in the active pocket of the protein were mutated to clarify the crucial amino acids determining the catalytic function and the selection of substrate structure. A total of 63 mutant elements were constructed, and the amino acid sites affecting the carboxylation function of TwCYP712Ks were analyzed. In particular, the key amino acids affecting the substrate selectivity of TwCYP712K2 towards oleanane-type and friedelane-type triterpenoids were revealed and the TwCYP712K2F127I and TwCYP712K2A227T mutants would result in a reversal of the product ratio. In conclusion, four proteins of TwCYP712Ks were semi-rationally designed by homologous protein alignment and mutual mutation to elucidate multiple amino acid sites determining the catalytic function of the proteins, and a series of activity-enhancing or altering mutants were obtained, which provide abundant catalytic elements for the biosynthesis of active triterpenoids from T. wilfordii, and the mechanism of carboxylation in the C-29 position was initially elucidated.

Tripterygium wilfordii  /  CYP712K  /  site-directed mutagenesis  /  polpunonic acid  /  3-epi-katonic acid
Pan-ting LIU, Yi-feng ZHANG, Yuan LIU, Jie GAO, Lin MA, Xiao-yi WU, Ya-ting HU, Ping SU, Shi-jun YUAN, Xia-nan ZHANG, Wei GAO. Study on the catalytic mechanism of triterpene C-29 carboxylases from Tripterygium wilfordii based on directed evolution[J]. Acta Pharmaceutica Sinica, 2024 , 59 (6) : 1883 -1893 . DOI: 10.16438/j.0513-4870.2023-1325
Year 2024 volume 59 Issue 6
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Article Info
doi: 10.16438/j.0513-4870.2023-1325
  • Receive Date:2023-11-24
  • Online Date:2025-11-26
  • Published:2024-06-12
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  • Received:2023-11-24
  • Revised:2024-01-16
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Affiliations
    1. School of Traditional Chinese Medicine, Capital Medical University, Beijing 100069, China
    2. National Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing 100700, China
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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