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Bioinformatics analysis and expressed level of Auxin response factor genes in Scutellaria baicalensis
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Ti-ying CHEN, Juan LIU*, Yuan YUAN*, Jun-hui ZHOU, Lu-qi HUANG
Acta Pharmaceutica Sinica | 2017, 52(11) : 1770 - 1776
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Acta Pharmaceutica Sinica | 2017, 52(11): 1770-1776
ORIGINAL ARTICLES
Bioinformatics analysis and expressed level of Auxin response factor genes in Scutellaria baicalensis
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Ti-ying CHEN, Juan LIU*, Yuan YUAN*, Jun-hui ZHOU, Lu-qi HUANG
Affiliations
  • National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing 100700, China
Published: 2017-11-12 doi: 10.16438/j.0513-4870.2017-0499
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Auxin response factor (ARF) is an important transcription factor for auxin signal transduction pathway, which regulates virtually every aspect of plant growth and development from embryogenesis to senescence. Nine full-length genes of ARF transcription factors were obtained from transcriptome dataset of Scutellaria baicalensis Georgi using the bioinformatics methods. The nucleotide and protein characteristics, subcellular localization, senior structural domains and conservative forecasts of those ARF transcription factors were analyzed. The phylogenetic tree showed that the nine ARFs in S. baicalensis were clustered together with ARF transcription factors in Arabidopsis thaliana, Oryza sativa subsp. Japonica and Nicotiana attenuate. The results of gene expression showed that:① The expression levels of ARF1, ARF3, ARF4, ARF8, ARF20 and ARF24 were upregulated after 100 μmol·L-1 GA3 treatment. However, the expression levels of ARF6 and ARF18 were downregulated; ② Those ARF genes were mainly expressed in the flowers of S. baicalensis; ③ There was a significant correlation between ARF genes and the genes involved in flavonoid biosynthesis. Our results provide a basis for further understanding the molecular regulation mechanism of flavonoid biosynthesis in S. baicalensis.

Scutellaria baicalensis  /  ARF transcription factor  /  bioinformatics  /  expression analysis
Ti-ying CHEN, Juan LIU, Yuan YUAN, Jun-hui ZHOU, Lu-qi HUANG. Bioinformatics analysis and expressed level of Auxin response factor genes in Scutellaria baicalensis[J]. Acta Pharmaceutica Sinica, 2017 , 52 (11) : 1770 -1776 . DOI: 10.16438/j.0513-4870.2017-0499
Year 2017 volume 52 Issue 11
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doi: 10.16438/j.0513-4870.2017-0499
  • Receive Date:2017-05-18
  • Online Date:2026-01-14
  • Published:2017-11-12
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  • Received:2017-05-18
  • Revised:2017-06-22
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    National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing 100700, China
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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