Bacterium-mediated cancer immunotherapy (BCI) presents numerous advantages in cancer treatment, while the immune response mechanism of dexamethasone (DEX) combined with BCI for tumor treatment remains unclear. [Objective] To investigate the therapeutic efficacy and mechanism of dexamethasone in combination with attenuated Salmonella typhimurium St.ΔppGpp-mediated BCI. [Methods] The inhibitory effects of St.ΔppGpp+DEX on cancer were evaluated in a murine model of colorectal cancer. In vivo imaging was utilized to determine the tumor targeting and colonization duration of St.ΔppGpp. Organ toxicity resulted from St.ΔppGpp+DEX treatment was assessed by hematoxylin and eosin (H&E) staining. Macrophage polarization, neutrophil recruitment, and T-cell responses were analyzed by flow cytometry and immunofluorescence assay of sections. The changes in inflammatory cytokines in the tumor microenvironment were examined via qRT-PCR. A mouse model transplanted with human colorectal cancer was employed to confirm the effect of T cell depletion on the therapeutic efficacy of St.ΔppGpp+DEX. [Results] The combined treatment St.ΔppGpp+DEX significantly decreased tumor size and enhanced the survival rate of mice. DEX extended the colonization of St.ΔppGpp in tumor cells. Furthermore, St.ΔppGpp+DEX did not induce damage to vital immune organs, and it facilitated the polarization of macrophages from M2 to M1 phenotype while suppressing neutrophil recruitment. T cell depletion did not influence the efficacy of St.ΔppGpp+DEX. [Conclusion] DEX can enhance the anti-tumor effects of St.ΔppGpp by inhibiting neutrophil recruitment and increasing the proportion of M1 macrophages in the tumor microenvironment.

[Objective] Ergothioneine, a rare natural amino acid, is a powerful antioxidant with important physiological functions in the body. It has been widely used in the fields of food, medicine, and cosmetics. However, extracting ergothioneine from mushrooms and chemical synthesis suffer from low yields and high costs. This study aims to use metabolic engineering approaches to improve the yield of ergothioneine in Actinoplanes sp. HS. [Methods] Firstly, we locked onto the genes potentially involved in ergothioneine synthesis in Actinoplanes sp. HS by bioinformatics analysis. Then, we identified the functions of these genes by heterologous expression in Escherichia coli BL21(DE3). Finally, the identified functional genes were combined and overexpressed in Actinoplanes sp. HS, and the yields of ergothioneine in the mutant strains were measured. By adding different concentrations of precursors to the fermentation medium, we investigated the impact of precursor concentration on the yield of ergothioneine. [Results] The enzymes encoded by BC03-04016, BC03-04015, BC03-04014, and BC03-04013 in Actinoplanes sp. HS could synthesize the ergothioneine precursor hercynine-cysteine-sulphoxide (HER-Cys-Sul). The enzymes encoded by BC03-04046 and BC03-04917 had the function of cleaving carbon-sulfur bonds, which could catalyze the formation of the final product ergothioneine from HER-Cys-Sul. The mutant strains YC313 and YC314 obtained through overexpression of genes in ergothioneine synthesis showed ergothioneine yields of 125 mg/L and 108 mg/L, respectively, which were 2.9 times and 2.5 times that of the wild-type strain Actinoplanes sp. HS. Additional supplementation of 0.35 g/L methionine in the fermentation medium increased the ergothioneine yield of YC313 by 24% compared with that in the original medium, and the addition of 10 g/L soybean meal resulted in a 19% increase in the ergothioneine yield. [Conclusion] In this study, we identified the genes and their functions in ergothioneine synthesis in Actinoplanes sp. HS and obtained two strains with high yields of ergothioneine through metabolic engineering. Furthermore, we investigated the impact of precursor supply on the yield of ergothioneine, which provided strategic support for the production of ergothioneine by Actinoplanes sp.

[Objective] To develop a rapid nucleic acid detection method for Marburg virus based on clustered regularly interspaced short palindromic repeats/associated protein 13a (CRISPR/Cas13a). [Methods] According to the conserved region of Marburg virus nucleoprotein (NP) gene, specific primers for reverse transcription recombinase-aided amplification (RT-RAA) and CRISPR RNA (crRNA) were designed and synthesized. RT-RAA was employed to amplify the target sequence. The amplification products were detected by the CRISPR-Cas13a system, and the results were interpreted by easy-readout and sensitive enhanced (ERASE) lateral flow test strips. Finally, the national reference panel was used to evaluate the sensitivity and specificity of the new method. [Results] A set of high-efficiency RT-RAA primers and crRNA targeting Marburg virus NP gene was screened, on the basis of which a CRISPR-ERASE method for the detection of Marburg virus was developed. The target nucleic acid with a concentration of 1 copy/μL could be detected within 1 h, and there was no cross-reaction with other several pathogens. [Conclusion] In this study, a rapid, simple, highly sensitive, and specific nucleic acid detection method for Marburg virus was developed based on CRISPR/Cas13a.

[Objective] Poly(butylene adipate-co-butylene 2,5-furandicarboxylate) (PBAF) is a biodegradable furan-based copolyester plastic. In the chemical synthesis of PBAF, the randomness of oligomer polymerization leads to the formation of complex polymers, such as block copolymers, random copolymers, and alternating copolymers. In this study, dimethyl furan-2,5-dicarboxylate (FDME) and 1,4-butanediol (BDO) were used as substrates to synthesize bis-BDO ester by enzymatic reaction to provide the bioplastic precursor for controllable polymerization and avoid complex by-products. [Methods] RgPETase from Rhizobacter gummiphilus was heterogeneously expressed in Escherichia coli BL21(DE3). RgPETase exhibited acyltransferase activity for FDME and BDO. The reaction conditions including pH, temperature, content of BDO (as both substrate and solvent), and amount of enzyme for the synthesis of bis-BDO ester were optimized. [Results] The optimum reaction conditions of RgPETase were pH 8.0, BDO content of 30%, and reaction temperature within the range of 25–30 ℃. Under the optimum conditions (30 ℃ and enzyme concentration of 6 μmol/L), RgPETase can catalyze 10 mmol/L FDME to produce (2.96±0.01) mmol/L bis-BDO ester. [Conclusion] RgPETase exhibits high acyltransferase activity and catalyzes the generation of bis-BDO ester from FDME via acyl transfer reaction under mild conditions, which provides a green and sustainable approach for synthesizing the precursor of PBAF.

[Objective] To explore the role of S1PP in the morphological differentiation, pathogenic process, and maintenance of sphingolipid balance of Magnaporthe oryzae. [Methods] We employed homologous recombination to delete the S1PP gene MoLCB3 from M. oryzae and characterized the obtained mutant ΔMolcb3 was by phenotypic analysis, gene complementation, and lipid metabolomics. Furthermore, we deleted the sphingosine kinase (SK) gene MoLcb4 from ΔMolcb3 to explore the relationship between MoLcb3 and MoLcb4. [Results] The deletion of MoLCB3 resulted in significant decreases in the mycelial growth rate and spore production and affected conidial malformation and initial appressorium formation. ΔMolcb3 completely lost the pathogenicity to barley. Moreover, the ΔMolcb3 mutant were significantly different from the wild type in responding to hyperosmic stress, cell wall integrity stress, high temperature stress, and fungal lipid synthesis inhibitors triadimefon and myriocin, suggesting that MoLcb3 was involved in these stress responses and lipid anabolism. Interestingly, the double mutant ΔMolcb3ΔMolcb4 basically compensated for all phenotypic defects of ΔMolcb3. In addition, lipid metabolomics showed that compared with the wild type, ΔMolcb3 presented significantly different levels of lipids, such as free fatty acids, ceramides, and phosphatidyl inositol. [Conclusion] MoLcb3 plays an important role in the mycelial growth, sporulation, spore germination, pathogenicity, stress responses, and lipid homeostasis. In addition, knockout of MoLCB4 can cushion the effects of MoLcb3 deletion. The results of this study provide new ideas for elucidating the sphingolipid metabolic pathway of M. oryzae and the development of inhibitors of fungal lipid biosynthesis.

[Objective] To explore the effects of compound lactic acid bacteria on the bacterial diversity and metabolites in the fermentation process of air-dried beef. [Methods] The lactic acid bacteria isolated in the early stage were inoculated into beef for fermentation with different strain combinations: C (Lactococcus garvieae TC-6:Pediococcus pentosaceus TMR-WJG, 1:1), D (L. garvieae TC-6:L. lactis TC-2, 1:1), G (P. pentosaceus TMR-WJG: L. lactis TC-2, 1:1), H (L. garvieae TC-6:P. pentosaceus TMR-WJG: L. lactis TC-2, 1:1:1), and K (without inoculation). High-throughput sequencing and non-targeted metabolomics were employed to study the bacterial community structure and metabolites, respectively, in air-dried beef inoculated with different combinations of lactic acid bacteria. [Results] A total of 304 species of bacteria belonging to 223 genera of 19 phyla were detected. Psychrobacter was predominant in the air-dried beef, with the average relative abundance of 52.21%. A total of 1 782 significantly differential metabolites were identified, including alkaloids, lipids, organic acids, and other metabolites related to flavor formation. The correlation analysis between microbiome and metabolome confirmed that the structures of bacterial communities differed significantly in the air-dried beef samples with different starters, which contributed to the differences of metabolites between groups, especially between groups C and K (P < 0.05). Specifically, the inoculation lowered the levels of coumarin and corilagin and elevated the levels of camellianin A, octadecadienoate, and lippioside Ⅱ. [Conclusion] The compound lactic acid bacteria selected in this study had a significant effect on the microbial community structure in air-dried beef. The quality formation of air-dried beef may be related to the microbial community structure and microbial metabolites. The compound lactic acid bacteria selected in this study demonstrated a potential application value.

[Objective] The plasmid interference system of CRISPR/LshCas13a was constructed in Escherichia coli MG1655-ΔrecA and Escherichia coli DH10B to analyze the escape phenomenon in RNA editing experiments by targeting the non-essential gene lacZ and the essential gene polA. [Methods] An inducible CRISPR/LshCas13a RNA editing system- associated plasmid was designed with LshCas13a from Leptotrichia shahii. MG1655-ΔrecA and DH10B were selected as the research objects. The Crisporo algorithm was employed to design the CRISPR RNA (crRNA) sequences targeting lacZ and polA, and the LshCas13a plasmid interference experiment was carried out to study the escape phenomena targeting lacZ and polA. The escape phenomenon of the LshCas13a system was evaluated based on the number and sequences of escaped colonies. PCR and Sanger sequencing were conducted to explore the escape events of the LshCas13a system. The escaped colonies carrying the LshCas13a system disrupted by the insertion sequence (IS) were selected, and OD₆₀₀ was measured to evaluate the growth recovery of the strains. [Results] The LshCas13a system was used to target lacZ and polA in MG1655-ΔrecA and DH10B. MG1655-ΔrecA escaped through point mutation of LshCas13a and IS-mediated transposition when lacZ was targeted. When polA was targeted, MG1655-ΔrecA and DH10B escaped by point mutation of LshCas13a, IS-mediated transposition, and mutation of the direct repeat (DR) sequence of crRNA. The mutation of LshCas13a promoted the recovery of strain growth. [Conclusion] The LshCas13a plasmid interference system successfully revealed the diversified escape phenomena during the RNA editing of E. coli, including IS-mediated the transposition of LshCas13a, point mutation of LshCas13a, and DR sequence mutation or recombination of crRNA. The results laid a foundation for optimization of the CRISPR/LshCas13a gene editing system.

[Objective] Porcine deltacoronavirus (PDCoV) is a major porcine enteric coronavirus, causing huge economic losses to the pig breeding industry worldwide. However, there is no commercial vaccine available for this virus. The spike (S) protein is a key factor inducing host immune response. In this study, the two sites 855 and 856 in the loop between the heptapeptide repeat-1 (HR1) and the central helix of PDCoV S protein were mutated to proline (E855P and V856P). Then, the recombinant S protein and mutated S protein (S2P) were expressed and purified by the ExpiCHO-S eukaryotic expression system, and their immunogenicity and immunoprotecive performance were evaluated for developing a PDCoV subunit vaccine with good immune effect. [Methods] The serum level of the specific antibody IgG in immunized mice was measured by indirect enzyme-linked immunosorbent assay. The serum neutralization test was carried out to determine the titer of neutralizing antibodies in the immunized mice. The proliferation of T lymphocytes in immunized mice was detected by flow cytometry. The secretion levels of interferon (IFN)-γ, IFN-α, interleukin (IL)-2, and IL-4 were determined. RT-qPCR was employed to measure the PDCoV load in the intestinal tissue of mice after challenge. Tissue sections were prepared to observe the intestinal lesions of mice. The distribution of PDCoV antigen in the intestinal tissue of mice was detected by immunohistochemistry. [Results] High levels of anti-PDCoV specific IgG antibodies were produced in mice after intramuscular injection of S and S2P subunit vaccines, and the serum of mice 42 days after immunization had a neutralizing effect on PDCoV. The 50% neutralizing protective titer of LLC-PK cells in the S2P group was significantly higher than that in the S group. In addition, the immunization with S and S2P significantly induced the proliferation of CD₄⁺ T lymphocytes in mice, which was higher in the S2P group than in the S group. The immunization with S2P induced the proliferation of CD₈⁺ T lymphocytes in mice, and the level of CD₈⁺ T lymphocytes showed no difference between the S group and the PBS group. The levels of IFN-γ, IFN-α, IL-2, and IL-4 in the S and S2P groups were significantly higher than those in the PBS group and had no difference between the S and S2P groups. The challenge assay results showed that the PBS group presented PDCoV, pathological damage, and a large number of PDCoV antigens in the intestinal tissue, while neither PDCoV nor intestinal tissue damage was detected in the S and S2P groups, which showed no significant difference between the two groups. [Conclusion] S2P induces higher level of the humoral immune response against PDCoV in mice than S. The vaccines prepared with both S2P and S have protective effects on mice. The findings lays a foundation for the follow-up study of PDCoV subunit vaccines.

β-glucosidases have been widely used in food, medicine, bioenergy and other fields, and thus it is necessary to explore new and efficient β-glucosidases.[Objective] To realize the prokaryotic expression of a GH1 glucosidase derived from Devosia psychrophila and characterize the enzymatic properties of the expressed protein. [Methods] The gene encoding the β-glucosidase derived from D. psychrophila was synthesized, named bgl59, and then transformed into Escherichia coli BL21(DE3). After the gene expression was induced, and the obtained protein was purified and characterized for the enzymatic properties. [Results] Bgl59 had a molecular weight of 48.8 kDa, with the highest activity at 55 ℃ and pH 6.0. After treatment for 1 h within the range of pH 5.0–8.5, Bgl59 maintained the relative activity over 80%. Bgl59 had the highest hydrolysis ability for 4-nitrophenyl-β-D-glucopyranoside (pNPG) among the eight substrates tested, with the K_m of 3.090 mmol/L, V_max of 194 μmol/(min·mg), and k_cat of 159 s⁻¹. The presence of 1 mmol/L of Ca²⁺ and Co²⁺ had a significant activating effect on Bgl59, while the presence of 0.1% SDS resulted in a complete loss of enzyme activity. The presence of 0.10 mol/L glucose and 0.30 mol/L xylose increased the activity of Bgl59 by 74% and 91%, respectively. Moreover, the enzyme remained the relative activity above 50% even when being cultured with 1.25 mol/L glucose or 2.00 mol/L xylose. [Conclusion] Bgl59 exhibits outstanding enzymatic properties, robust pH stability, and tolerance to metal ions and chemical reagents. It is a rare glucose-activated β-glucosidase with exceptional tolerance to glucose, holding significant potential for future industrial production and application.

The spread of antibiotic resistance has aroused global concern. The development of technologies for detecting antibiotic resistance genes (ARGs) is essential for curbing the migration and spread of ARGs from the environment to plants/animals and human populations. This paper describes the development timeline of existing nucleic acid detection technologies and their first applications to the detection of ARGs and summarizes their detection principles, advantages and disadvantages, and development potential. Furthermore, this paper prospects that isothermal amplification combined with CRISPR/Cas might be the core technology for the development of in-situ rapid detection methods. By reviewing the development history of each technology, this paper aims to give insights into the development and applications of technologies for detecting ARGs and provide technical support for the research and control of antibiotic resistance transmission.