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A CRISPR/Cas13a-based nucleic acid detection method for Marburg virus
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Kuocheng YAN1, Hao LI1, Xuanyang BAI2, Yao HAN1, Dawei SHI3, Leili JIA2, *, Yansong SUN1, *
Acta Microbiologica Sinica | 2024, 64(8) : 3073 - 3085
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Acta Microbiologica Sinica | 2024, 64(8): 3073-3085
Technology and Method
A CRISPR/Cas13a-based nucleic acid detection method for Marburg virus
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Kuocheng YAN1, Hao LI1, Xuanyang BAI2, Yao HAN1, Dawei SHI3, Leili JIA2, *, Yansong SUN1, *
Affiliations
  • 1 Academy of Military Medical Sciences, Academy of Military Sciences, Beijing 100071, China
  • 2 Chinese PLA Center for Disease Control and Prevention, Beijing 100071, China
  • 3 Division Ⅱ of Diagnostic for Infectious Diseases, National Institutes for Food and Drug Control, Beijing 100050, China
Published: 2024-04-28 doi: 10.13343/j.cnki.wsxb.20240076
Outline
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[Objective] To develop a rapid nucleic acid detection method for Marburg virus based on clustered regularly interspaced short palindromic repeats/associated protein 13a (CRISPR/Cas13a). [Methods] According to the conserved region of Marburg virus nucleoprotein (NP) gene, specific primers for reverse transcription recombinase-aided amplification (RT-RAA) and CRISPR RNA (crRNA) were designed and synthesized. RT-RAA was employed to amplify the target sequence. The amplification products were detected by the CRISPR-Cas13a system, and the results were interpreted by easy-readout and sensitive enhanced (ERASE) lateral flow test strips. Finally, the national reference panel was used to evaluate the sensitivity and specificity of the new method. [Results] A set of high-efficiency RT-RAA primers and crRNA targeting Marburg virus NP gene was screened, on the basis of which a CRISPR-ERASE method for the detection of Marburg virus was developed. The target nucleic acid with a concentration of 1 copy/μL could be detected within 1 h, and there was no cross-reaction with other several pathogens. [Conclusion] In this study, a rapid, simple, highly sensitive, and specific nucleic acid detection method for Marburg virus was developed based on CRISPR/Cas13a.

Marburg virus  /  CRISPR/Cas13a  /  nucleic acid detection  /  reverse transcription recombinase-aided amplification (RT-RAA)
Kuocheng YAN, Hao LI, Xuanyang BAI, Yao HAN, Dawei SHI, Leili JIA, Yansong SUN. A CRISPR/Cas13a-based nucleic acid detection method for Marburg virus[J]. Acta Microbiologica Sinica, 2024 , 64 (8) : 3073 -3085 . DOI: 10.13343/j.cnki.wsxb.20240076
  • National Key Research and Development Program of China(2023YFC2605100)
  • National Key Research and Development Program of China(2021YFC2301100)
Year 2024 volume 64 Issue 8
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Article Info
doi: 10.13343/j.cnki.wsxb.20240076
  • Receive Date:2024-01-29
  • Online Date:2026-03-19
  • Published:2024-04-28
Article Data
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History
  • Received:2024-01-29
  • Accepted:2024-04-19
Funding
National Key Research and Development Program of China(2023YFC2605100)
National Key Research and Development Program of China(2021YFC2301100)
Affiliations
    1 Academy of Military Medical Sciences, Academy of Military Sciences, Beijing 100071, China
    2 Chinese PLA Center for Disease Control and Prevention, Beijing 100071, China
    3 Division Ⅱ of Diagnostic for Infectious Diseases, National Institutes for Food and Drug Control, Beijing 100050, China

Corresponding:

*E-mail: JIA Leili,
E-mail: SUN Yansong,
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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