To explore an efficient method for extracting messenger RNA (mRNA) from yeast and establish a specific detection method by reverse transcription real-time fluorescence quantitative polymerase chain reaction (RT-qPCR).
A high-performance silica magnetic beads by self-developed were used as carrier, an efficient yeast mRNA extraction technique was developed by combining streptavidin magnetic beads (SM) conjugated with Oligo(dT) and Trizol lysis, followed by optimization of magnetic bead concentration and magnetic adsorption time. Primers based on the yeast chitin synthase 2 (CHS2) gene, established a yeast-specific RT-qPCR assay, and its specificity and stability were validated.
Under optimized extraction conditions, the method enabled extraction yeast mRNA from various concentration, yielded 2.13 μg mRNA even from a low-concentration (2×103 cfu/mL). This yeast detection methodexhibited a wide linear range from 2×103 to 2×107 cfu/mL, with a linear equation of Y=–1.69X+33.412 (r2=0.9966), the method exhibited high specificity for the target yeast.
This study successfully establish a mRNA extraction technique by yeast-specific magnetic bead-based and a RT-qPCR detection method, exhibits good specificity and sensitivity, provide a new technology for the detection of yeast contamination in food and scientific research.
| 科 Family | 属数 Number of genus | 种数 Number of species | 占总种数比例 Percentage of total species (%) | 属 Genus | 种数 Number of species | 占总种数比例 Percentage of total species (%) |
|---|---|---|---|---|---|---|
| 鹅膏菌科Amanitaceae | 2 | 11 | 5.26 | 鹅膏菌属 Amanita | 10 | 4.78 |
| 小菇科 Mycenaceae | 2 | 12 | 5.74 | 丝盖伞属 Inocybe | 5 | 2.39 |
| 多孔菌科 Polyporaceae | 8 | 14 | 6.70 | 蜡蘑属 Laccaria | 5 | 2.39 |
| 红菇科 Russulaceae | 3 | 23 | 11.00 | 小皮伞属 Marasmius | 6 | 2.87 |
| 小菇属 Mycena | 11 | 5.26 | ||||
| 光柄菇属 Pluteus | 5 | 2.39 | ||||
| 红菇属 Russula | 17 | 8.13 | ||||
| 栓菌属 Trametes | 5 | 2.39 |