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Role of senescent genes in the treatment, prognosis and tumor microenvironment for osteosarcoma
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Tian-Bo Xu, De-Guo Liu, Zeng-Hui Gu, Yu-Xiang Zheng, Zhen-Hai Hou*
Medical Journal of Chinese People’s Liberation Army | 2024, 49(5) : 557 - 569
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Medical Journal of Chinese People’s Liberation Army | 2024, 49(5): 557-569
Basic Research
Role of senescent genes in the treatment, prognosis and tumor microenvironment for osteosarcoma
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Tian-Bo Xu, De-Guo Liu, Zeng-Hui Gu, Yu-Xiang Zheng, Zhen-Hai Hou*
Affiliations
  • Department of Third Orthopedic, the 903 Hospital of the Joint Support Force of the Chinese PLA, Hangzhou, Zhejiang 310000, China
Published: 2024-05-28 doi: 10.11855/j.issn.0577-7402.1968.2023.0620
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Objective To analyze and verify the role of senescent genes in the treatment, prognosis, and tumor microenvironment (TME) characteristics of osteoblastic osteosarcoma, bioinformatic methods were employed. Methods Senescent genes were obtained from the China National Genome Science database (https://ngdc.cncb.ac.cn/aging/index). The gene expression profile and clinical information of osteosarcoma patients were sourced from the TARGET database (https://ocg.cancer.gov/programs/target), while single-cell RNA-sequencing (scRNA-seq) data was collected from GSE162454 on the Gene Expression Omnibus (GEO) for downstream analysis. Osteosarcoma cells were classified based on scRNA-seq, and differential expression analysis between osteoblasts/chondroblasts and other cell types was conducted to identify differently expressed genes (DEGs). After matching with the senescent genes, prognostic senescent DEGs were identified through univariable and multivariable Cox regression analysis. Subsequently, the osteosarcoma senescent-related model (OSRM) was constructed, and the risk score was calculated. The role of OSRM in treatment, prognosis, and TME of osteosarcoma was further investigated. Results The analysis revealed that GSE162454 contained 6 osteosarcoma samples, with 19 933 cells identified after filtering, quality control, and normalization. Seventeen cellular subtypes were identified using uniform manifold approximation and projection (UMAP) methods. A total of 4821 DEGs were found between osteoblasts/chondroblasts and other subtypes, with 132 senescent DEGs obtained after matching with the senescent gene set. In the TARGET database, 4 prognostic senescent DEGs [ADH5 (alcohol dehydrogenase 5), ARHGAP1 (Rho GTPase activating protein 1), APOE (apolipoprotein E), and ATF4 (activating transcription factor 4)] were identified through univariable and multivariable Cox analyses to construct OSRM. Based on risk score, patients were stratified into high- and low-risk groups, with the latter showing better prognosis (HR=0.13, 95%CI 0.06-0.28, P<0.001) and higher sensitivity to immune checkpoint inhibitors. qRT-PCR and Western blotting confirmed the high expression of senescent genes ADH5 (P<0.01), APOE (P<0.01), and ATF4 (P<0.05) in the K7M2 osteosarcoma cell line, suggesting the potential for predicting the response to anti-PD-1 immunotherapy for osteosarcoma. Conclusions scRNA-seq facilitated the division of osteosarcoma into 17 cell subtypes. ADH5, ARHGAP1, APOE, and ATF4 emerged as potential cancer-promoting or suppressing senescent genes in osteosarcoma. OSRM was found to be associated with treatment response, prognosis, and TME characteristics, thereby promoting the molecular pathological diagnosis of osteoblastic osteosarcoma and prediction for anti-PD-1 immunotherapy.

osteosarcoma  /  immune microenvironment  /  risk model  /  bioinformatic analysis
Tian-Bo Xu, De-Guo Liu, Zeng-Hui Gu, Yu-Xiang Zheng, Zhen-Hai Hou. Role of senescent genes in the treatment, prognosis and tumor microenvironment for osteosarcoma[J]. Medical Journal of Chinese People’s Liberation Army, 2024 , 49 (5) : 557 -569 . DOI: 10.11855/j.issn.0577-7402.1968.2023.0620
  • Medical Health Science and Technology Project of Zhejiang Provincial Health Commission(2019KY538)
Year 2024 volume 49 Issue 5
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Article Info
doi: 10.11855/j.issn.0577-7402.1968.2023.0620
  • Receive Date:2022-08-09
  • Online Date:2025-11-21
  • Published:2024-05-28
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History
  • Received:2022-08-09
  • Accepted:2022-12-13
Funding
Medical Health Science and Technology Project of Zhejiang Provincial Health Commission(2019KY538)
Affiliations
    Department of Third Orthopedic, the 903 Hospital of the Joint Support Force of the Chinese PLA, Hangzhou, Zhejiang 310000, China

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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
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占总种数比例
Percentage of
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种数
Number of
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Percentage of total
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鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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