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Identification and validation of necroptosis key genes in spinal cord injury
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Dong Liu, Zhi-Jie Zhu, Zhao Zhang, Zhen Wang, Hong-Bin Fan*
Medical Journal of Chinese People’s Liberation Army | 2024, 49(8) : 905 - 913
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Medical Journal of Chinese People’s Liberation Army | 2024, 49(8): 905-913
Basic Research
Identification and validation of necroptosis key genes in spinal cord injury
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Dong Liu, Zhi-Jie Zhu, Zhao Zhang, Zhen Wang, Hong-Bin Fan*
Affiliations
  • Department of Orthopedics, Xijing Hospital, Air Force Medical University, Xi'an, Shaanxi 710032, China
Published: 2024-08-28 doi: 10.11855/j.issn.0577-7402.0523.2023.1023
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Objective To investigate the role of necroptosis key genes in spinal cord injury using bioinformatics methods to provide new targets for the diagnosis and treatment of spinal cord injury. Methods The peripheral blood transcriptome data of spinal cord injury samples (n=38) and healthy control samples (n=10) were obtained from GSE151371 data set in Gene Expression Omnibus (GEO) database. R software was used to identify differentially expressed genes and perform functional enrichment analysis. Machine learning algorithms (random forest and LASSO) and protein-protein interaction (PPI) networks are used to screen for necroptosis key genes and construct a diagnostic nomogram for spinal cord injury. Establish a rat spinal cord injury model to further verify the expression of necroptosis key genes by Western blotting and immunofluorescence staining. Results A total of 2050 differentially expressed genes were identified in the two groups. KEGG pathway enrichment analysis showed that the differentially expressed genes were involved in the nucleotide-binding oligomerization domain (NOD)‑like receptor signaling pathway, hematopoietic cell lineage, and necroptosis; GO enrichment analysis showed that the differentially expressed genes were involved in the activation of leukocytes, tertiary granulation, and regulation of the defense response, and so on. Intersection analysis screened 15 necroptosis differentially expressed genes. KEGG pathway enrichment analysis showed that necroptosis differentially expressed genes were involved in necroptosis, influenza, and NOD-like receptor signaling pathways; GO enrichment analysis showed that necroptosis differentially expressed genes were significantly enriched in the cellular response to cytokine stimulation, cytokine-mediated signaling pathways, and response to cytokines. Integration of two machine learning algorithms and PPI analysis further screened two necroptosis key genes (IL1B and PLA2G4A). The nomogram established using IL1B and PLA2G4A can be used for early prediction of the occurrence of spinal cord injury. The validation results of the rat spinal cord injury model showed that the protein expression of IL-1β and PLA2G4A in the spinal cord injury group were significantly higher than those in the sham group (P<0.05). Conclusions IL1B and PLA2G4A as key genes of necroptosis involved in the development of spinal cord injury, can be used to predict the development of spinal cord injury with the promise of being new targets for the prevention and treatment of spinal cord injury

spinal cord injury  /  necroptosis  /  machine learning  /  diagnosis  /  biomarkers
Dong Liu, Zhi-Jie Zhu, Zhao Zhang, Zhen Wang, Hong-Bin Fan. Identification and validation of necroptosis key genes in spinal cord injury[J]. Medical Journal of Chinese People’s Liberation Army, 2024 , 49 (8) : 905 -913 . DOI: 10.11855/j.issn.0577-7402.0523.2023.1023
  • National Natural Science Foundation of China(31971272)
Year 2024 volume 49 Issue 8
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Article Info
doi: 10.11855/j.issn.0577-7402.0523.2023.1023
  • Receive Date:2023-04-11
  • Online Date:2025-11-21
  • Published:2024-08-28
Article Data
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History
  • Received:2023-04-11
  • Accepted:2023-06-14
Funding
National Natural Science Foundation of China(31971272)
Affiliations
    Department of Orthopedics, Xijing Hospital, Air Force Medical University, Xi'an, Shaanxi 710032, China

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表12种不同金属材料的力学参数

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Number of
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鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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