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Efficacy and safety evaluation of artificial intelligence-identified antimicrobial peptides targeting avian pathogenic Escherichia coli in broiler chickens
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Emre Demirsoy1, 2, 3, Teagan I. Parkin4, Shaeleen E. Mihalynuk4, Anna H. Dema4, Lorissa Corrie4, Marika E. Heilker4, Haley N. Kuecks-Winger4, Anat Yanai5, 6, Uluc B. Birol6, Michael Mcllwee7, Kay de Wet7, Mathijs Knipscheer7, Victoria Bowes7, Vanessa Tuytel7, Liam Ritchie7, Wolfgang Köster8, Emil Berberov8, William R. Cox6, Monica Kotkoff5, Vanessa C. Thompson4, René L. Warren1, Erin Fraser9, 10, Linda M. N. Hoang2, 11, Fraser Hof12, Fatih Birol6, Caren C. Helbing4, Inanc Birol2, 3, 5, 6, 13, *
Journal of Animal Science and Biotechnology | 2026, 17(4) : 2256 - 2272
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Journal of Animal Science and Biotechnology | 2026, 17(4): 2256-2272
ANIMAL NUTRITION AND FEEDSTUFF
Efficacy and safety evaluation of artificial intelligence-identified antimicrobial peptides targeting avian pathogenic Escherichia coli in broiler chickens
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Emre Demirsoy1, 2, 3, Teagan I. Parkin4, Shaeleen E. Mihalynuk4, Anna H. Dema4, Lorissa Corrie4, Marika E. Heilker4, Haley N. Kuecks-Winger4, Anat Yanai5, 6, Uluc B. Birol6, Michael Mcllwee7, Kay de Wet7, Mathijs Knipscheer7, Victoria Bowes7, Vanessa Tuytel7, Liam Ritchie7, Wolfgang Köster8, Emil Berberov8, William R. Cox6, Monica Kotkoff5, Vanessa C. Thompson4, René L. Warren1, Erin Fraser9, 10, Linda M. N. Hoang2, 11, Fraser Hof12, Fatih Birol6, Caren C. Helbing4, Inanc Birol2, 3, 5, 6, 13, *
Affiliations
  • 1BC Cancer, Vancouver, BC V5Z 1L3, Canada
  • 2British Columbia Centre for Disease Control, Public Health Laboratory, Vancouver, BC V6Z R4R, Canada
  • 3Genome Science and Technology Graduate Program, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
  • 4Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8P 5C2, Canada
  • 5Canada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC V5Z 4S6, Canada
  • 6Amphoraxe Life Sciences Inc., Vancouver, BC V6L 3C9, Canada
  • 7SJ Ritchie Research Farms, Abbotsford, BC V4X 2N4, Canada
  • 8Vaccine and Infectious Disease Organization (VIDO), University of Saskatchewan, Saskatoon, SK S7N 5E3, Canada
  • 9Communicable Disease Prevention and Response, British Columbia Centre for Disease Control, Vancouver, BC V6Z R4R, Canada
  • 10School of Population and Public Health, University of British Columbia, Vancouver, BC V6T 1Z3, Canada
  • 11Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
  • 12Department of Chemistry, University of Victoria, Victoria, BC V8P 5C2, Canada
  • 13Department of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada
Published: 2026-08-15 doi: 10.1186/s40104-026-01417-8
Outline
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Background

The overuse of antibiotics in both veterinary and human medicine has resulted in the emergence of antibiotic-resistant bacteria, prompting a search for effective alternatives. Antimicrobial peptides (AMPs) are short, often cationic, peptide-based molecules with antimicrobial and immunomodulatory activity, which makes them promising alternatives to conventional antibiotics in poultry production.

Results

From a prior machine-learning-guided screen of 875 candidate AMPs against a wide bacterial panel, 62 exhibited activity against avian pathogenic Escherichia coli (APEC) and low in vitro hemolytic and cytotoxic activity. We selected three lead AMPs from this list (named TeRu4, TeBi1, and PeNi4), and evaluated their in vitro and in vivo efficacy, safety, and immunomodulatory potential for use in poultry farming. In animal experiments, AMPs were administered via in ovo injection on d 18 of embryonic development. In APEC challenge trials, yolk sacs were inoculated with APEC post-hatch to assess early chick mortality, while in pen trials, birds were raised in a commercial production setting for 35 d. For challenged birds, TeBi1 (10 μg/egg) significantly reduced culture-positive rates for APEC in the air sac and pericardium, increased body weight by 50% and reduced cytokine transcript levels by 10%-30% on d 7 post hatch. In HD11 chicken macrophage-like cultured cells, TeRu4 (16 μg/mL) suppressed lipopolysaccharide (LPS)-induced pro-inflammatory cytokine transcript levels. In pen trials, TeRu4 (20 μg/egg) increased the survival probability of female birds by 4.9%, while TeBi1 (20 μg/egg) increased the survival probability of all birds by 4.4%, by d 35. Gene expression analysis revealed AMP- and sex-specific cytokine responses. In pen trials, no significant differences were observed in mean weights, feed conversion ratio (FCR), and flock uniformity on d 35. By integrating high-throughput in ovo automation with large-scale commercial pen trials, this study provides a systematic translational bridge from in silico AI discovery to field-relevant poultry production interventions.

Conclusions

These findings demonstrate that TeBi1 and TeRu4 are promising antibiotic alternatives that improve survival, modulate immune responses, and maintain normal growth performance in broiler chickens in this experimental setting.

Antimicrobial peptide  /  APEC  /  Broiler chicken  /  Efficacy  /  Immunomodulation  /  Safety  /  Transcriptomics
Emre Demirsoy, Teagan I. Parkin, Shaeleen E. Mihalynuk, Anna H. Dema, Lorissa Corrie, Marika E. Heilker, Haley N. Kuecks-Winger, Anat Yanai, Uluc B. Birol, Michael Mcllwee, Kay de Wet, Mathijs Knipscheer, Victoria Bowes, Vanessa Tuytel, Liam Ritchie, Wolfgang Köster, Emil Berberov, William R. Cox, Monica Kotkoff, Vanessa C. Thompson, René L. Warren, Erin Fraser, Linda M. N. Hoang, Fraser Hof, Fatih Birol, Caren C. Helbing, Inanc Birol. Efficacy and safety evaluation of artificial intelligence-identified antimicrobial peptides targeting avian pathogenic Escherichia coli in broiler chickens[J]. Journal of Animal Science and Biotechnology, 2026 , 17 (4) : 2256 -2272 . DOI: 10.1186/s40104-026-01417-8
  • Genome Canada and Genome British Columbia for financial support through the large scale applied projects program(#291PEP)
Year 2026 volume 17 Issue 4
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Article Info
doi: 10.1186/s40104-026-01417-8
  • Receive Date:2025-11-08
  • Online Date:2026-08-13
  • Published:2026-08-15
Article Data
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History
  • Received:2025-11-08
  • Accepted:2026-04-09
Funding
Genome Canada and Genome British Columbia for financial support through the large scale applied projects program(#291PEP)
Affiliations
    1BC Cancer, Vancouver, BC V5Z 1L3, Canada
    2British Columbia Centre for Disease Control, Public Health Laboratory, Vancouver, BC V6Z R4R, Canada
    3Genome Science and Technology Graduate Program, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
    4Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC V8P 5C2, Canada
    5Canada's Michael Smith Genome Sciences Centre at BC Cancer, Vancouver, BC V5Z 4S6, Canada
    6Amphoraxe Life Sciences Inc., Vancouver, BC V6L 3C9, Canada
    7SJ Ritchie Research Farms, Abbotsford, BC V4X 2N4, Canada
    8Vaccine and Infectious Disease Organization (VIDO), University of Saskatchewan, Saskatoon, SK S7N 5E3, Canada
    9Communicable Disease Prevention and Response, British Columbia Centre for Disease Control, Vancouver, BC V6Z R4R, Canada
    10School of Population and Public Health, University of British Columbia, Vancouver, BC V6T 1Z3, Canada
    11Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
    12Department of Chemistry, University of Victoria, Victoria, BC V8P 5C2, Canada
    13Department of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z3, Canada

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* Inanc Birol
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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