Three specimens of the serranid fish (Serranidae), Plectranthias kamii Randall, 1980 were collected from fish market, Bitung, North Sulawesi on May and June 2010. Some morphological characters P. kamii is closely related to P. sheni, P. megalophthalmus, P. retrofasciatus, P. rubrifasciatus, P. knappi, P. helenae, P. pelicieri, P. jothyi, P. retrofasciatus and P. randalli in sharing of body width, upper jaw length, pelvic spine length and orbit diameter. Meristic count characters of P. kamii differ from P. sheni, P. pilicieri, P. megalophthalmus, P. retrofasciatus and P. rubrifasciatus in having more numerous dorsal spine (18 vs. 15–17) and below lateral line (33–34 vs. 29–33) and differ from P. megalophthalmus and P. rubrifasciatus in having more numerous pored scales in lateral line (13 vs. 14–15) and shorter of anal spine. The present anthiine fish collected from Bitung, Indonesia was described as new record and bringing the total number of species of this genus known in Indonesia to seven.

Bacterial diseases affecting corals pose an enormous threat to the health of coral reefs. The relationship between certain bacterial species and coral diseases remain largely unknown. Pigment abnormalities are common in Porites lutea. Here we used Illumina 16S rRNA gene sequencing to analyze the bacterial communities associated with healthy P. lutea and P. lutea with pigment abnormalities. We observed an increase of alpha diversity of the bacterial community of P. lutea with pigment abnormalities, relative to healthy corals. We then identified changes in the abundance of individual operational taxonomic units (OTUs) between pigmented and healthy corals. We were able to identify eight OTUs associated with pigment abnormalities, which are possibly the causative agents of pigment abnormalities.

Recent studies have highlighted the valuable role played by mangrove forests in carbon sequestration and storage. Although Indonesia accounts for a large proportion of global mangrove area, knowledge on the carbon stock and sources in the Indonesian mangrove is still limited. In this study, we quantified the ecosystem organic carbon (OC) stock and its spatial variation at an oceanic mangrove in Wori, North Sulawesi, Indonesia. The sources of soil OC were also investigated. The results showed that the mangrove soil had a substantial OC stock containing 15.4 kg/m² (calculated by carbon) in the top 50 cm soil, and represented the majority of the ecosystem OC stock at the Wori mangrove. The mangrove biomass and ecosystem OC stock were 8.3 kg/m² and 23.7 kg/m², respectively. There was no significantly difference in the soil OC stock among the stations with difference distances offshore, while the highest mangrove biomass OC stock was found at the seaward station. Isotope mixing calculations showed that the rich OC in mangrove soils was attributed to the accumulated autochthonous mangrove source while the suspended organic matter in tidal water and the mangrove-adjacent seagrass contributed less than 20% to the soil OC. The results further demonstrated the importances of the oceanic mangrove in carbon storage and the mangrove plants in contributing OC to their soils.

Mangrove ecosystems are sites with high biodiversity of benthic fauna, and fiddler crabs (genus Uca) are common benthic fauna in mangroves. The North Sulawesi in Indonesia has a good condition of mangrove while the information of the fiddler crabs is still limited. Manual samplings were conducted in wet, dry and transient seasons at a mangrove in Kema, North Sulawesi to investigate the species composition, density and distribution pattern of fiddler crabs. A total of 168 individuals, subjected to eight species of genus Uca crabs were collected at the mangrove, with U. triangularis having the highest abundance and U. annulipes having the lowest abundance. The densities of fiddle crabs were 27.56 ind./m², 32.89 ind./m² and 14.22 ind./m² at the seaward, middle and landward zones, respectively, and the density was higher in dry and wet seasons than in transient season.

Upwelling occurs on the coast of Java between June and October, forced by local alongshore winds associated with the southeasterly monsoon. This causes variations in phytoplankton community composition in the upwelling zone compared with the surrounding offshore area. Based on pigments analysis with subsequent calculations of group contributions to total chlorophyll a (Chl a) using CHEMTAX, we studied the distribution and composition of phytoplankton assemblages in the subsurface chlorophyll maximum along the south coast of Java and the influence of upwelling. Nineteen phytoplankton pigments were identified using high-performance liquid chromatography, and CHEMTAX analysis associated these to ten major phytoplankton groups. The phytoplankton community in the coastal area influenced by upwelling was characterized by high Chl a and fucoxanthin concentrations, indicating the dominance of diatoms. In contrast, in the offshore area, the Chl a and fucoxanthin concentrations declined to very low levels and the community was dominated by haptophytes represented by 19′-Hexanoyloxyfucoxanthin. Accordingly, microphytoplankton was found to be the major size class in the coastal area influenced by upwelling, while nanophytoplankton was most abundant in the offshore area. Low concentrations of other accessory pigments indicated less contribution from dinoflagellates, prasinophytes, chlorophytes and cryptophytes. Photo-pigment indices revealed that photosynthetic carotenoids (PSCs) were the largest component of the pigment pool, exceeding the proportion of Chl a, with the average PSC_TP up to 0.62. These distribution trends can mainly be explained by phytoplankton adaption strategies to upwelling and subsurface conditions by changing species composition and adjusting the pigment pool.

In this study, the horizontal and vertical distribution of primary production (PP) and its monthly variations were described based on field data collected from the Daya Bay in January–December of 2016. The relationships between PP and environmental factors were analyzed using a general additive model (GAM). Significant seasonal differences were observed in the horizontal distribution of PP, while vertical distribution showed a relatively consistent unimodal pattern. The monthly average PP (calculated by carbon) ranged from 48.03 to 390.56 mg/(m²·h), with an annual average of 182.77 mg/(m²·h). The highest PP was observed in May and the lowest in November. Additionally, the overall trend in PP was spring>summer>winter>autumn, and spring PP was approximately three times that of autumn PP. GAM analysis revealed that temperature, bottom salinity, phytoplankton, and photosynthetically active radiation (PAR) had no significant relationships with PP, while longitude, depth, surface salinity, chlorophyll a (Chl a) and transparency were significantly correlated with PP. Overall, the results presented herein indicate that monsoonal changes and terrestrial and offshore water systems have crucial effects on environmental factors that are associated with PP changes.

Specific bacterial communities interact with phytoplankton in laboratory algal cultures. These communities influence phytoplankton physiology and metabolism by transforming and exchanging phytoplankton-derived organic matter. Functional bacterial groups may participate in various critical nutrients fluxes within these associations, including nitrogen (N) metabolism. However, it is unclear how bacterial communities and the associated algae respond to changes of phycosphere N conditions. This response may have far-reaching implications for global nutrient cycling, algal bloom formation, and ecosystem function. Here, we identified changes in the bacterial communities associated with Phaeodactylum tricornutum when co-cultured with different forms and concentrations of N based on the Illumina HiSeq sequencing of 16S rRNA amplicons. Phylogenetic analysis identified Proteobacteria and Bacteroidetes as the dominant phyla, accounting for 99.5% of all sequences. Importantly, bacterial abundance and community structure were more affected by algal abundance than by the form or concentration of inorganic N. The relative abundance of three gammaproteobacterial genera (Marinobacter, Algiphilus and Methylophaga) markedly increased in N-deficient cultures. Thus, some bacterial groups may play a role in the regulation of N metabolism when co-cultured with P. tricornutum.

The generation of high-resolution data is increasingly important in understanding the complexities of coastal ocean and developing sound management strategies, especially in view of the long-term impact of severe weather systems. The impact of severe weather systems, when integrated over time, can be significant when compared with tidal oscillations. This paper presents a study of water transport out of Vermilion Bay in response to a short, intense event associated with a passing atmospheric cold front, and reports the application of an Acoustic Doppler Current Profiler (ADCP) mounted on an Automated Surface Craft (ASC), known as the auto-boat or unmanned boat, developed in our lab at the Louisiana State University, to generate high resolution data accurately at a fraction of the cost of a manned boat. In our study, we used a manned boat and an unmanned boat, each for over 24 h to cover an entire diurnal tidal cycle, to measure flow velocity profiles to calculate the total transport. A stationary ADCP was deployed in the Southwest Pass of the Vermilion Bay from May 2009 to April 2012, providing data almost continuously (with only one major gap), with a 717-day record of water transport between the northern Gulf of Mexico and Vermilion Bay, and demonstrates the importance of the pass in water transport.

The spatiotemporal features of submesoscale processes (SMPs) in the northeastern South China Sea (SCS) are analyzed based on a high-resolution simulation from 2009 to 2012. The simulation results show that the SMPs with a vertical relative vorticity that matches the local planetary vorticity are ubiquitous in the upper ocean of the northeastern SCS. The SMPs distribution shows an asymmetry due to centrifugal instability, with stronger positive vorticity than negative vorticity. Meanwhile, the SMPs demonstrate an obvious seasonal variation. The SMPs are strong and active in winter but weak and inactive in summer. An investigation of the SMPs generation mechanisms reveals that flow straining and mixed layer depth account for this seasonal variation. The strong flow straining and deep mixed layer depth in winter favor the SMP generation via frontogenesis and mixed layer instability.