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Cloning and Haplotype Analysis of GSN4, a Gene for Grain Size and Grain Number in Rice
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Bingze CHAI1, Junge WANG1, Kaixiong WU1, Jialong LIU1, Yue WU1, Huisen WANG1, Lin TAN1, Deyong REN1, Zhenyu GAO1, Li ZHU1, Qiang ZHANG1, 2, Guangheng ZHANG1, 2, Qian QIAN1, 2, Jiang HU1, 2, *
Chinese Journal of Rice Science | 2026, 40(5) : 584 - 597
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Chinese Journal of Rice Science | 2026, 40(5): 584-597
• Research Papers •
Cloning and Haplotype Analysis of GSN4, a Gene for Grain Size and Grain Number in Rice
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Bingze CHAI1, Junge WANG1, Kaixiong WU1, Jialong LIU1, Yue WU1, Huisen WANG1, Lin TAN1, Deyong REN1, Zhenyu GAO1, Li ZHU1, Qiang ZHANG1, 2, Guangheng ZHANG1, 2, Qian QIAN1, 2, Jiang HU1, 2, *
Affiliations
  • 1 State Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 310006, China
  • 2Academician Workstation, National Nanfan Research Institute (Sanya), Chinese Academy of Agricultural Sciences, Sanya 572024, China
Published: 2026-09-10 doi: 10.16819/j.1001-7216.2026.251212
Outline
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Objective

Grain size is a critical determinant of rice yield. This study aims to explore novel genes regulating grain size and expand the current genetic regulatory network, and provide valuable genetic resources for molecular design breeding of high-yield rice varieties.

Method

The large-grain mutant gsn4, generated by EMS mutagenesis of the japonica rice variety W7, was used as experimental material. A combination of systematic phenotypic identification, cytological observation, gene mapping, functional verification, subcellular localization, and haplotype analysis was performed to clone and functionally characterize the candidate gene.

Result

Phenotypic identification revealed that the gsn4 mutant exhibited pleiotropic effects. Compared with the wild type, its grain length, grain width, and 1000-grain weight were significantly increased, whereas plant height, panicle length, and grain number per panicle were significantly decreased. Cytological analysis indicated that GSN4 regulates rice grain size by modulating both cell proliferation and expansion in glumes. Map-based cloning, together with CRISPR/Cas9 gene-editing validation, confirmed LOC_Os04g46450 as the candidate gene underlying GSN4. This gene encodes a nuclear-localized E3 ubiquitin ligase protein, which acts as a negative regulator of rice grain size and modulates plant growth and development through the brassinosteroid (BR) biosynthesis pathway. Haplotype analysis further identified Hap1 as the elite haplotype conferring the most favorable effects on grain width and 1000-grain weight.

Conclusion

Collectively, this study elucidates the function and regulatory mechanism of GSN4, enriches the genetic regulatory network governing rice grain size, and provides important genetic resources and a theoretical basis for molecular design breeding of high-yield rice varieties.

grain size  /  GSN4  /  cell cycle  /  cell expansion  /  rice  /  haplotype  /  BR
柴炳泽, 王俊格, 吴凯雄, 刘嘉龙, 吴越, 王荟森, 谭霖, 任德勇, 高振宇, 朱丽, 张强, 张光恒, 钱前, 胡江. 水稻粒形和穗粒数基因GSN4的克隆与单倍型分析. 中国水稻科学, 2026 , 40 (5) : 584 -597 . DOI: 10.16819/j.1001-7216.2026.251212
Bingze CHAI, Junge WANG, Kaixiong WU, Jialong LIU, Yue WU, Huisen WANG, Lin TAN, Deyong REN, Zhenyu GAO, Li ZHU, Qiang ZHANG, Guangheng ZHANG, Qian QIAN, Jiang HU. Cloning and Haplotype Analysis of GSN4, a Gene for Grain Size and Grain Number in Rice[J]. Chinese Journal of Rice Science, 2026 , 40 (5) : 584 -597 . DOI: 10.16819/j.1001-7216.2026.251212
Year 2026 volume 40 Issue 5
117
18
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Article Info
doi: 10.16819/j.1001-7216.2026.251212
  • Receive Date:2025-12-27
  • Online Date:2026-09-29
  • Published:2026-09-10
Article Data
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History
  • Received:2025-12-27
  • Revised:2026-03-17
Funding
Affiliations
    1 State Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 310006, China
    2Academician Workstation, National Nanfan Research Institute (Sanya), Chinese Academy of Agricultural Sciences, Sanya 572024, China

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表12种不同金属材料的力学参数
科
Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)
属
Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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