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Overview and investigation method development of microbe-associated dark matter
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Yuxiang ZHU1, 2, Zipeng LIN1, Yan WANG1, 2, 3
Acta Microbiologica Sinica | 2026, 66(4) : 1519 - 1532
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Acta Microbiologica Sinica | 2026, 66(4): 1519-1532
• Special Section •
Overview and investigation method development of microbe-associated dark matter
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Yuxiang ZHU1, 2, Zipeng LIN1, Yan WANG1, 2, 3
Affiliations
  • 1.MOE Key Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Ocean University of China, Qingdao, Shandong, China
  • 2.Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao, Shandong, China
  • 3.Laboratory for Marine Ecology, Laoshan Laboratory, Qingdao, Shandong, China
Published: 2026-04-04 doi: 10.13343/j.cnki.wsxb.20250883
Outline
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The dark matter of microbes, encompassing uncultivated microbial taxa and unknown biological features, has been widely accepted by microbiologists. With the advancement of microbial investigation methods, a series of dark matter concepts related to microbes have been successively proposed, and numerous research advances in this field have been well-documented. However, these concepts exhibit complex and overlapping connotations, and their inherent connections and distinctions have not yet been clearly clarified. This review work systematically summarizes the current conceptual frameworks of different dark matter types of microbes and analyzes the relevant investigation methodologies and their development trends. This article will help researchers in the microbial resource field gain a clearer understanding of the conceptual connotation and current research status of microbe-associated dark matter and promote the in-depth development of dark matter resource mining.

microbial resources  /  dark matter  /  microbial dark matter  /  gene resources
Yuxiang ZHU, Zipeng LIN, Yan WANG. Overview and investigation method development of microbe-associated dark matter[J]. Acta Microbiologica Sinica, 2026 , 66 (4) : 1519 -1532 . DOI: 10.13343/j.cnki.wsxb.20250883
Funding
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  • National Key Research and Development Program of China(2024YFC2816000)
  • National Natural Science Foundation of China(42176108)
  • National Natural Science Foundation of China(32370030)
  • National Natural Science Foundation of China(324B2002)
  • Natural Science Foundation of Shandong Province(ZR2024JQ035)
  • Young Taishan Scholars Program of Shandong Province(tsqn202103029)
  • Science and Technology Innovation Project of Laoshan Laboratory(LSKJ202203205)
  • Fundamental Research Funds for the Central Universities(202442001)
Appendix
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Year 2026 volume 66 Issue 4
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124
53
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Article Info
doi: 10.13343/j.cnki.wsxb.20250883
  • Receive Date：2025-11-30
  • Online Date：2026-04-14
  • Published：2026-04-04
Article Data
Affiliations
History
  • Received：2025-11-30
  • Accepted：2026-02-04
Funding
National Key Research and Development Program of China(2024YFC2816000)
National Natural Science Foundation of China(42176108)
National Natural Science Foundation of China(32370030)
National Natural Science Foundation of China(324B2002)
Natural Science Foundation of Shandong Province(ZR2024JQ035)
Young Taishan Scholars Program of Shandong Province(tsqn202103029)
Science and Technology Innovation Project of Laoshan Laboratory(LSKJ202203205)
Fundamental Research Funds for the Central Universities(202442001)
Affiliations
    1.MOE Key Laboratory of Evolution and Marine Biodiversity, College of Marine Life Sciences, Ocean University of China, Qingdao, Shandong, China
    2.Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao, Shandong, China
    3.Laboratory for Marine Ecology, Laoshan Laboratory, Qingdao, Shandong, China

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Citations
表12种不同金属材料的力学参数
科
Family		 属数
Number of
genus		 种数
Number of
species		 占总种数比例
Percentage of
total species (%)		 属
Genus		 种数
Number of
species		 占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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