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RNA-seq reveals the effects ofbdhA knockout on co-production of nattokinase and menaquinone-7 byBacillus subtilis
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Xilin HUANG1, Junbao HUANG1, Xuli GAO1, Yani LUO1, Wei TAO1, Mingyu GUO1, Yongyuan LIU1, Jing WU1, Chao WU1, Zhenglian XUE1, 2, Yu CHEN1, 2, Yan LIU1, 2, *
Acta Microbiologica Sinica | 2024, 64(7) : 2394 - 2406
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Acta Microbiologica Sinica | 2024, 64(7): 2394-2406
Research Articles
RNA-seq reveals the effects ofbdhA knockout on co-production of nattokinase and menaquinone-7 byBacillus subtilis
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Xilin HUANG1, Junbao HUANG1, Xuli GAO1, Yani LUO1, Wei TAO1, Mingyu GUO1, Yongyuan LIU1, Jing WU1, Chao WU1, Zhenglian XUE1, 2, Yu CHEN1, 2, Yan LIU1, 2, *
Affiliations
  • 1 College of Biology and Food Engineering, Anhui Polytechnic University, Wuhu 241000, Anhui, China
  • 2 Anhui Engineering Laboratory for Industrial Microbiology Molecular Breeding, Wuhu 241000, Anhui, China
Published: 2024-07-04 doi: 10.13343/j.cnki.wsxb.20230768
Outline
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Nattokinase has a variety of physiological functions and serves the treatment of cardiovascular diseases. Menaquinone-7, one of indispensable fat-soluble vitamins in the human body, can prevent diseases such as osteoporosis and Parkinson's disease. [Objective] To enhance the co-production of nattokinase and menaquinone-7 byBacillus subtilis, reveal the co-production mechanism in the recombinant strain, and provide new metabolic engineering strategies for the production of nattokinase and menaquinone-7. [Methods] We constructedB.subtilis 168-ΔbdhA by knocking out the 2,3-butanediol dehydrogenase genebdhA fromB.subtilis 168. RNA-seq was employed to measure the expression changes of key enzyme-coding genes in the nattokinase and menaquinone-7 synthesis pathways. [Results] Compared withB.subtilis 168, the content of 2,3-butanediol inB.subtilis 168-ΔbdhA was 2.76 g/L, which was reduced by 64.0%. The yields of nattokinase and menaquinone-7 were increased by 30.0% and 60.0%, respectively. The expression levels of genes related to central carbon metabolism, oxidative phosphorylation, and the synthesis of nattokinase and menaquinone-7 changed by RNA-seq analysis. The expression level of nattokinase negative regulator genecodY was down-regulated by 2.19-fold in the mutant. The expression ofsecA,tatAD, andtatC involved in protein secretion showed the down-regulation of 0.37-fold, up-regulation of 2.81-fold, and up-regulation of 0.50-fold, respectively. [Conclusion] The knockout ofbdhA blocked the carbon flux of 2,3-butanediol and promoted glycerol uptake, causing more carbon fluxing to the synthesis pathways of nattokinase and menaquinone-7. The down-regulation of the negative regulatorcodY promoted the transcription of nattokinase. The up- and down-regulation of genes involved in protein scretion promoted extracellular secretion of menaquinone-7.

Bacillus subtilis  /  nattokinase  /  menaquinone-7  /  2,3-butanediol dehydrogenase  /  RNA-seq
Xilin HUANG, Junbao HUANG, Xuli GAO, Yani LUO, Wei TAO, Mingyu GUO, Yongyuan LIU, Jing WU, Chao WU, Zhenglian XUE, Yu CHEN, Yan LIU. RNA-seq reveals the effects ofbdhA knockout on co-production of nattokinase and menaquinone-7 byBacillus subtilis[J]. Acta Microbiologica Sinica, 2024 , 64 (7) : 2394 -2406 . DOI: 10.13343/j.cnki.wsxb.20230768
  • National Natural Science Foundation of China(32372295)
  • Outstanding Youth Research Project in Anhui Province Universities(2023AH020013)
  • Anhui Provincial Undergraduate Innovation and Entrepreneurship Program(202310363254)
Year 2024 volume 64 Issue 7
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Article Info
doi: 10.13343/j.cnki.wsxb.20230768
  • Receive Date:2023-12-13
  • Online Date:2026-03-19
  • Published:2024-07-04
Article Data
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History
  • Received:2023-12-13
  • Accepted:2024-03-18
Funding
National Natural Science Foundation of China(32372295)
Outstanding Youth Research Project in Anhui Province Universities(2023AH020013)
Anhui Provincial Undergraduate Innovation and Entrepreneurship Program(202310363254)
Affiliations
    1 College of Biology and Food Engineering, Anhui Polytechnic University, Wuhu 241000, Anhui, China
    2 Anhui Engineering Laboratory for Industrial Microbiology Molecular Breeding, Wuhu 241000, Anhui, China

Corresponding:

*LIU Yan, E-mail:
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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