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Amplicon sequencing of rpsD reveals the community composition and transgenerational transmission of Bacteroides in family members
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Longlong LI1, 2, Xueling ZHANG2, Yuxin CHU2, Hailong SUN2, Yongqing NI2
Acta Microbiologica Sinica | 2025, 65(9) : 4136 - 4150
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Acta Microbiologica Sinica | 2025, 65(9): 4136-4150
Research Article
Amplicon sequencing of rpsD reveals the community composition and transgenerational transmission of Bacteroides in family members
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Longlong LI1, 2, Xueling ZHANG2, Yuxin CHU2, Hailong SUN2, Yongqing NI2
Affiliations
  • 1 College of Life Sciences, Shihezi University, Shihezi, Xinjiang, China
  • 2 Key Laboratory for Xinjiang Special Probiotics and Dairy Technology of the Eighth Division of Xinjiang Production and Construction Corps, School of Food Science and Technology, Shihezi University, Shihezi, Xinjiang, China
Published: 2025-09-04 doi: 10.13343/j.cnki.wsxb.20250175
Outline
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Obligate symbiotic bacteria in the human gut play a key role in maintaining microecological balance and are generally thought to be transmitted vertically across generations through breastfeeding. However, compared with that on Bifidobacterium, there is limited literature on the transmission and diffusion mechanisms of Bacteroides, a representative of obligate symbiotic microbiota in the human body, within populations. Additionally, the occurrence and cross-generational transmission of Bacteroides within families remain poorly understood. [Objective] We explored the vertical transmission and co-occurrence patterns of Bacteroides among family members, aiming to reveal the assembly mechanism of gut microbiota in the human body and provide a theoretical basis for the recommendation of microbiome-based interventions and the realization of personalized gut regulation. [Methods] A high-throughput sequencing dataset for Bacteroides-specific rpsD in fecal samples from four families with 50 members in 3-4 generations in Xinjiang, China was established. Then, the composition and diversity of Bacteroides communities among different families and member groups were measured at the species level and amplicon sequence variant (ASV) level by comparison and annotation. [Results] A total of 16 Bacteroides species and 3 704 ASVs were identified, of which 1 293 ASVs were common among the four families. The five species with the highest number of ASVs were B. fragilis (653), B. ovatus (619), B. uniformis (507), B. caccae (463), and B. finegoldii (314), which were also the five species with the highest relative abundance and prevalence. There were significant differences in community composition and abundance of Bacteroides among families, with B. fragilis, B. uniformis, and B. faecichinchillae being the most significant representatives. There was no significant difference in alpha or beta diversity among family members grouped according to gender and age (P>0.05). By contrast, the beta diversity analysis based on Bray-Curtis distance showed differences between families (P=0.001). According to the sharing rate of ASVs and Bray-Curtis distance, the Bacteroides strain similarity of mother-child and siblings was significantly higher than that of father-child, couple, and unrelated members. [Conclusion] The community structure and diversity of Bacteroides were characterized by family convergence, with significant differences among families. The similarity of Bacteroides strains was the highest within the mother-child and sibling groups among different social relationship groups, supporting transgenerational vertical transmission at the strain level. The conclusion remains to be validated by the combination of the strain isolation method and metagenomic sequencing.

Bacteroides  /  high-throughput sequencing of rpsD  /  vertical transmission  /  community structure
Longlong LI, Xueling ZHANG, Yuxin CHU, Hailong SUN, Yongqing NI. Amplicon sequencing of rpsD reveals the community composition and transgenerational transmission of Bacteroides in family members[J]. Acta Microbiologica Sinica, 2025 , 65 (9) : 4136 -4150 . DOI: 10.13343/j.cnki.wsxb.20250175
  • Special Funds for Science and Technology Development of Xinjiang Production and Construction Corps(2023AB050)
  • Special Funds for Science and Technology Development of Xinjiang Production and Construction Corps(2024AB050)
  • Joint Funds of the National Natural Science Foundation of China(U1903205)
  • Innovation Project for Postgraduate Students of the Xinjiang Production and Construction Corps(BTYJXM-2024-K10)
Year 2025 volume 65 Issue 9
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Article Info
doi: 10.13343/j.cnki.wsxb.20250175
  • Receive Date:2025-03-04
  • Online Date:2026-02-07
  • Published:2025-09-04
Article Data
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History
  • Received:2025-03-04
  • Accepted:2025-03-27
Funding
Special Funds for Science and Technology Development of Xinjiang Production and Construction Corps(2023AB050)
Special Funds for Science and Technology Development of Xinjiang Production and Construction Corps(2024AB050)
Joint Funds of the National Natural Science Foundation of China(U1903205)
Innovation Project for Postgraduate Students of the Xinjiang Production and Construction Corps(BTYJXM-2024-K10)
Affiliations
    1 College of Life Sciences, Shihezi University, Shihezi, Xinjiang, China
    2 Key Laboratory for Xinjiang Special Probiotics and Dairy Technology of the Eighth Division of Xinjiang Production and Construction Corps, School of Food Science and Technology, Shihezi University, Shihezi, Xinjiang, China

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*E-mail: SUN Hailong,
NI Yongqing,
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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