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Isolation, whole genome analysis, and plant growth-promoting effect evaluation of endophytic Acinetobacter baumannii J-7 from rice grown in soda saline-alkaline soil
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Zilin SHANG1, Jianhong WU1, Yang LI2, Shaojie BI1, *, Yanjie WANG1, *
Acta Microbiologica Sinica | 2025, 65(8) : 3331 - 3347
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Acta Microbiologica Sinica | 2025, 65(8): 3331-3347
Microbiome in Black Soils
Isolation, whole genome analysis, and plant growth-promoting effect evaluation of endophytic Acinetobacter baumannii J-7 from rice grown in soda saline-alkaline soil
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Zilin SHANG1, Jianhong WU1, Yang LI2, Shaojie BI1, *, Yanjie WANG1, *
Affiliations
  • 1.Heilongjiang Provincial Key Laboratory of Environmental Microbiology and Recycling of Agro-waste in Cold Region, College of Life Science and Biotechnology, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China
  • 2.Daqing Agricultural Technology Extension Center, Daqing, Heilongjiang, China
Published: 2025-08-04 doi: 10.13343/j.cnki.wsxb.20250141
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[Objective] To screen and identify an endophytic bacterial strain with plant growth-promoting effects on rice from the stem of rice grown in the soda saline-alkaline soil in Daqing City, Heilongjiang Province and explore its plant growth-promoting effects and related genes, with a view to enriching and utilizing the endophytic microbial resources of rice. [Methods] An endophytic bacterial strain was isolated from rice stems via the dilution coating method, and the strain was identified by morphological observation, physiological and biochemical tests, and 16S rRNA gene sequencing. The mechanisms underlying the plant growth-promoting effects of the strain were deciphered by Illumina sequencing of the whole genome. antiSMASH was used to predict the synthetic gene clusters of secondary metabolites. The plant growth-promoting performance of the strain was evaluated by promotion performance, rice seed germination, and seedling cultivation tests. [Results] An isolated endophytic bacterial strain of rice was designated as J-7, and the strain was identified as Acinetobacter baumannii by whole genome sequencing and ANI analysis. The strain was a mesophilic bacterium with an OD600 value of 0.679 at pH 10.5, showcasing alkaline tolerance. The strain had an OD600 value of 0.293 in the presence of 1.0 mol/L NaCl, exhibiting salt tolerance. The strain had the ability to solubilize inorganic and organic phosphorus, with the amounts of inorganic and organic phosphorus solubilized being (179.54±1.21) mg/L and (65.57±1.07) mg/L, respectively. In addition, the strain had the ability to produce siderophores and utilize ferric ammonium salts. The strain genome (national microbiology data center accession number: NMDC60154488) was 3 666 630 bp in length, with the G+C content of 39% and a total of 3 432 genes (including 8 potential synthetic gene clusters of secondary metabolites). The rice seed germination test results showed that the application of 1×107 CFU/mL suspension of the strain significantly increased the radicle length and stem base width by 13.02% and 17.68%, respectively, compared with the control group. The rice seedling cultivation test results showed that the application of 2×109 CFU/mL suspension of the strain significantly increased the plant height and root length by 32.69% and 36.55%, respectively, compared with the control group. [Conclusion] Strain J-7 has a good growth-promoting effect on rice, showing application potential in agriculture as a microbial strain resource. Whole genome sequencing provides a theoretical basis for in-depth study of the plant growth-promoting mechanism of A. baumannii.

rice endophytes  /  plant growth-promoting effect  /  growth characteristics  /  whole genome sequencing
Zilin SHANG, Jianhong WU, Yang LI, Shaojie BI, Yanjie WANG. Isolation, whole genome analysis, and plant growth-promoting effect evaluation of endophytic Acinetobacter baumannii J-7 from rice grown in soda saline-alkaline soil[J]. Acta Microbiologica Sinica, 2025 , 65 (8) : 3331 -3347 . DOI: 10.13343/j.cnki.wsxb.20250141
  • ‘Jiebang Guashuai’ Open Competition Key Technology Research and Development Project of Heilongjiang Bayi Agricultural University(JB20220001)
Year 2025 volume 65 Issue 8
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Article Info
doi: 10.13343/j.cnki.wsxb.20250141
  • Receive Date:2025-02-25
  • Online Date:2026-02-06
  • Published:2025-08-04
Article Data
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History
  • Received:2025-02-25
  • Accepted:2025-04-18
Funding
‘Jiebang Guashuai’ Open Competition Key Technology Research and Development Project of Heilongjiang Bayi Agricultural University(JB20220001)
Affiliations
    1.Heilongjiang Provincial Key Laboratory of Environmental Microbiology and Recycling of Agro-waste in Cold Region, College of Life Science and Biotechnology, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang, China
    2.Daqing Agricultural Technology Extension Center, Daqing, Heilongjiang, China

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*E-mail: WANG Yanjie,
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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