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Green control of soil-borne crop diseases: advances in rhizosphere microbe research
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Shengfeng PAN1, 2, Zengwei FENG2, Qing YAO3, En YANG1, Yang ZHOU2, Honghui ZHU2
Acta Microbiologica Sinica | 2026, 66(2) : 495 - 515
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Acta Microbiologica Sinica | 2026, 66(2): 495-515
Review
Green control of soil-borne crop diseases: advances in rhizosphere microbe research
Full
Shengfeng PAN1, 2, Zengwei FENG2, Qing YAO3, En YANG1, Yang ZHOU2, Honghui ZHU2
Affiliations
  • 1.Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, Yunnan, China
  • 2.Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, Guangdong, China
  • 3.Guangdong Key Laboratory of Microbial Signaling and Disease Control Laboratory, College of Horticulture, South China Agricultural University, Guangzhou, Guangdong, China
Published: 2026-02-04 doi: 10.13343/j.cnki.wsxb.20250591
Outline
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Soil-borne diseases are currently the most significant type of plant disease restricting crop production and threatening food safety. The rhizosphere microbiome, often regarded as the “second genome of plants”, has shown considerable potential in controlling soil-borne crop diseases. The use of rhizosphere microbes to control soil-borne diseases offers many advantages, such as being environmentally friendly, efficient, and broadly applicable, which makes it a hot topic in rhizosphere microbe research. In this review, we first introduced rhizosphere microbes and their potential for controlling soil-borne crop diseases. Subsequently, by integrating the latest research advances, we systematically summarized seven mechanisms of microbial control against soil-borne diseases and categorized them into three pathways: (1) direct interactions between microbes and pathogens; (2) direct and indirect interactions between microbes and plants; (3) indirect interactions among microbes. Furthermore, we reviewed the current applications of the rhizosphere microbes in controlling soil-borne crop diseases. Finally, we analyzed the key research challenges in using rhizosphere microbes for soil-borne disease control and discussed potential solutions, aiming to provide references for advancing the green control of soil-borne diseases.

rhizosphere microbe  /  soil-borne disease  /  mechanism of disease resistance  /  multi-omics
Shengfeng PAN, Zengwei FENG, Qing YAO, En YANG, Yang ZHOU, Honghui ZHU. Green control of soil-borne crop diseases: advances in rhizosphere microbe research[J]. Acta Microbiologica Sinica, 2026 , 66 (2) : 495 -515 . DOI: 10.13343/j.cnki.wsxb.20250591
  • the National Natural Science Foundation of China(32300093)
  • the Guangdong Special Support Program(2021JC06N628)
  • the Strategic Research and Consulting Project of the Guangdong Research Institute of China Engineering Science and Technology Development Strategy(2025-GD-13)
  • the GDAS’ Project of Science and Technology Development(2022GDASZH-2022010101)
Year 2026 volume 66 Issue 2
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193
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Article Info
doi: 10.13343/j.cnki.wsxb.20250591
  • Receive Date:2025-07-30
  • Online Date:2026-02-05
  • Published:2026-02-04
Article Data
Affiliations
History
  • Received:2025-07-30
  • Accepted:2025-11-04
Funding
the National Natural Science Foundation of China(32300093)
the Guangdong Special Support Program(2021JC06N628)
the Strategic Research and Consulting Project of the Guangdong Research Institute of China Engineering Science and Technology Development Strategy(2025-GD-13)
the GDAS’ Project of Science and Technology Development(2022GDASZH-2022010101)
Affiliations
    1.Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, Yunnan, China
    2.Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, Guangdong, China
    3.Guangdong Key Laboratory of Microbial Signaling and Disease Control Laboratory, College of Horticulture, South China Agricultural University, Guangzhou, Guangdong, China

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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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