The binding between the guanidino group in the side chain of arginine (Arg
+) and carboxylates through H-bond-reinforced ionic contacts was shown to interrupt myoglobin aggregation [
24]. Studies have also shown that positively charged substances can interact with actin through nonspecific electrostatic adsorption, leading to disturbances in actin dynamics [
7]. Many studies have reported the use of cationic polymers for the spatiotemporal interruption of G-actin polymerization [
7]. Inspired by this phenomenon, we deduced that the interaction between highly protonated R11 and negatively charged actin possibly followed the same pattern (Fig.
1). Visualized molecular dynamics (MD) simulations were used to elucidate the mechanism governing the interactions between R11 and actin. The formation of hydrogen bonds and salt bridges between R11 and the negatively charged glutamic and aspartic acids of actin allows R11 to insert into the central interstices of the G-actin tetramer, hence disrupting the stability of the tetramer (Fig.
6A and B). Specifically, at the initial phase of the interaction (0 ns), G-actin monomers are in close proximity to their assemblies as tetramers, whose surface R11 lands on. At 50 ns, the tetramers began to collapse, enabling R11 to migrate more closely to the tetramer center. At 100 ns, the tetramers fell apart more severely so that part of R11 could be inserted into the protein–protein interaction interface. At 150 ns, the crevices of the tetramer were occupied by R11, indicating deeper integration (Fig.
6C). Microscale thermophoresis (MST) offers more direct evidence of the interaction between actin and R11. G-actin monomers displayed strong binding affinity, with the
Kd reaching 1.51 nM, whereas R11 presented a stronger binding affinity (
Kd = 1.60 μM) with G-actin monomers. After the integration of R11 into G-actin monomers, the subsequent interaction between G-actin monomers themselves almost disappears, demonstrating that R11 blocks the polymerization of G-actin monomers (Fig.
6E). Intracellular trafficking analysis revealed that R11 shares a close spatial relationship with F-actin in T24 and 5637 cells, although the distribution of R11 expanded to other intracellular regions (Fig.
6F). In the control group, the bundle appearance of F-actin filaments could be observed, with these structures interconnecting and extending to form a network [
25]. However, R11 disorganized the cross-linked F-actin network, leaving only short and dim filaments (Fig.
6G). More detailed information on the colocalization of G-actin and F-actin is provided in Fig.
6H. Under no R11 threat, G-actins were able to adhere to bundled F-actin. Once the cells were exposed to R11, the dynamic balance between F-actin and G-actin was disrupted, resulting in the detachment of G-actin (Fig.
6H). As a result, the ratio of F-actin to G-actin was approximately 2 to 3 times lower than that of the control group (Fig.
6I) and decreased more dramatically as the concentration of R11 increased to 5 μM (Fig.
6J). Taken together, the actin rearchitecture induced by the R11 threat is initiated by strong binding between R11 and G-actin, followed by the unsuccessful transition of F-actin into G-actin, which eventually results from the loss of bundled F-actin.