So far, acrylamide could malfunction heart development in zebrafish and rat embryos during early life stages, indicating the transgenerational toxic effects of parental exposure in offspring. To comprehensively address the epigenetic role of DNA methylation, we scrutinized the gene expression of DNA modification enzymes in hearts of adult zebrafish and mice (Fig.
S11C and D). We found that chronic exposure to acrylamide suppresses the expression of
Dnmt8 in adult zebrafish heart and
Dnmt3a in mouse heart, but with no significant changes (Fig.
S11C and D). Then, we traced back to the expression of DNA modification enzymes during the early life stage. We found no noteworthy alterations in the expression levels of
Dnmt1,
Dnmt3,
Dnmt4,
Dnmt5,
Dnmt6,
Dnmt7, and
Dnmt8 with acrylamide exposure at 5 dpf (Fig.
S11E to K). Notably, gestational exposure to acrylamide disturbs NOTCH pathway, especially in the ligand
Dll4 and the downstream signal
Hey2 in hearts of rat embryos (Fig.
8A), indicating that gestational exposure may alter DNA methylation associated with the occurrence of CVDs in rat embryos. Subsequently, we examined the expression of DNA modification enzymes in hearts of rat embryos at different gestational periods (GD8, GD12, and GD19). Interestingly, the expression of
Dnmt1,
Dnmt3a, and
Dnmt3b decreases first and then increases in a dose-dependent manner during the progress of pregnancy with acrylamide exposure (Fig.
8B to J), indicating that acrylamide affects methylation modifications in early embryonic development [
40]. These results demonstrate that acrylamide exhibits a potential epigenetic impact on the heart development and gestational exposure may induce aberrant cardiovascular disorders via DNA methylation modification. The maintenance enzyme DNMT1 plays a pivotal role in overseeing the majority of DNA methylation and ensuring its persistence throughout an organism's lifetime [
41]. To further understand how acrylamide binds to DNMT1, we used molecular docking and molecular dynamics (MD) simulations to elucidate the binding mechanism. The results of molecular docking analysis unveiled the formation of hydrogen bonds between acrylamide and specific residues of DNMT1 (Fig.
8K). Furthermore, the binding interactions were probed through the conventional MD simulations along the 100-ns MD trajectories (Fig.
S11L and M). The root mean square deviation of DNMT1 was enhanced from 0.64 nm (apo–DNMT1) to 0.73 nm (acrylamide–DNMT1) (Fig.
S11L), implying the destabilization of the DNMT1 conformation upon the binding of acrylamide. We analyzed snapshots from MD trajectories to investigate the overall structure and conformational changes within the binding domain of each docking complex at 0, 50, and 90 ns (Fig.
8L). The primary catalytic area for the transfer of methyl donors from
S-adenosylhomocysteine to cytosine bases is the C-terminal catalytic domain of DNMT1, which is composed of residues P1224, C1226, E1266, and R1312 [
42]. Notably, the relative positions of these 4 residues have undergone significant changes, as shown by the current snapshot. The distance between the functional groups of P1224 and C1226 in the acrylamide–DNMT1 complex began at 6.89 Å and decreased to 6.46 Å at 50 ns and 6.26 Å at 90 ns (Fig.
8L). This indicates that acrylamide causes conformational changes in the methyltransferase domain's 3-dimensional structure, which reduces the catalytic activity of DNMT1. To elucidate the ligand–receptor interaction, we then calculated the binding energy
ΔGbinding between acrylamide and DNMT1 as −20.423 ± 10.261 kJ/mol (Fig.
S11N), indicating that acrylamide tightly binds to DNMT1 with a large polar solvation energy
ΔGpolar (60.796 ± 7.363 kJ/mol) (Fig.
S11N).
ΔEvdw was −49.179 ± 6.825 kJ/mol (Fig.
S11N), and hydrogen bond interactions and hydrophobic interactions play crucial roles in the acrylamide–DNMT1 complex binding process. Thus, acrylamide has the ability to reposition its catalytic domain and enter into the binding pocket of DNMT1, disrupting the catalytic activity of DNMT1. Interestingly, long-term and low-dose exposure to acrylamide may interfere with the DNMT1-mediated DNA methylation state, indicating that the conformational remodeling of DNMT1 contributes to acrylamide-induced epigenetic toxicity. Taken together, when tracing back to the reason for acrylamide-induced HF, we recognize that frequent fried food consumption, a way to long-term dietary exposure to acrylamide, can also produce harmful epigenetic changes evoked by DNMT1 in offspring, thereby attracting public concerns about transgenerational inheritance risk of acrylamide-induced HF.