Nitrite reductases (NiRs) are natural enzymes that facilitate the reduction of nitrite. They are essential for the microbial nitrogen cycle and play a vital role in regulating numerous physiological and pathological processes associated with nitric oxide (NO) in living organisms. By the merits of protein engineering, a variety of artificial NiR mimics have been developed. These include traditional artificial proteins, metal-azacycle complexes, and nanozymes such as metal, metal oxide/sulfide nanoparticles, metal-organic frameworks, bioinorganic nanohybrids, and advanced single-atom nanozymes. This development marks an important milestone in broadening the application of enzyme-like catalytic nitrite reduction across various fields, such as biomedicine, biosensing, food science, and environmental science. In this review, we first outline the different types of NiRs, along with their active center structures and catalytic mechanisms, drawing from recent research and discoveries. We then classify the reported NiR mimic materials, discussing their active center structures and enzyme-like catalytic mechanisms. Additionally, we explore the potential future applications and challenges facing NiR mimics in the field of biomedicine.
| 1. | Heme group: Hemoglobin [15], Mb [17], Ngb [18], Cyb [19], cytochrome c [4], and eNOS [20] all contain a heme group featuring a porphyrin ring with a central iron atom. Cytochrome c oxidase possesses a binuclear center composed of heme a and heme a3-Cu_B [21]. |
| 2. | Iron atom coordination: In hemoglobin, Mb, Ngb, Cygb, cytochrome c, and eNOS, the iron atom is coordinated by the 4 nitrogen atoms of the porphyrin ring and a histidine residue (Fig. 2). In the cytochrome bc1 complex, the iron in cytochrome b is coordinated by the nitrogen atoms of the porphyrin ring, while the Rieske iron–sulfur center contains a [2Fe–2S] cluster [22,23]. |
| 3. | Electron transfer function: The cytochrome bc1 complex, cytochrome c, and cytochrome c oxidase are critical components of the mitochondrial electron transport chain, responsible for efficient electron transfer [24]. eNOS generates NO through its active center, which involves oxygen and electron transfer [20]. Conversely, hemoglobin, Mb, Ngb, and Cygb are primarily engaged in oxygen binding and transport, enabling the reversible binding and release of oxygen [15]. |
| 4. | Cofactors: In eNOS, tetrahydrobiopterin (BH4) acts as a cofactor [25], similar to the copper ions in cytochrome c oxidase [21] and the iron–sulfur clusters in the cytochrome bc1 complex [26]. These cofactors help stabilize the enzyme's active conformation and promote the reaction. |
| 1. | CuNiRs are essential enzymes in the denitrification process, catalyzing the reduction of nitrite to NO. Recent studies have elucidated their catalytic mechanisms, revealing intricate details of proton and electron transfers. As illustrated in Fig. 3A, the reduction of nitrite involves several key steps: First, nitrite binds to the T2 copper center, initially coordinating through one oxygen atom [1]. Then, protons are transferred to the nitrite via a network of water molecules and residues, including Asp98 and His255 [1], which are crucial for proton delivery and maintaining the active site structure [33]. Subsequently, electrons are transferred from the T1 copper site to the T2 site, reducing the nitrite to a nitrosyl intermediate. Finally, the nitrosyl intermediate undergoes further protonation and electron transfer, leading to the release of NO and regeneration of the enzyme's resting state [34]. Studies have proposed that CuNiRs operate via a random-sequential mechanism, where electron transfer from T1 to T2 is rate-limiting. The order of nitrite binding and reduction can vary depending on substrate concentration and pH, influencing the enzyme's efficiency [35]. Density functional theory (DFT) calculations have provided detailed insights into the reaction pathways, activation energies, and transition states involved in nitrite reduction. These studies have clarified the roles of protons and electrons in the catalytic cycle and resolved previous controversies regarding the coordination modes of intermediates [1]. In summary, CuNiRs employ a complex mechanism involving coordinated proton and electron transfers to reduce nitrite to NO efficiently. Understanding these processes is crucial for applications in environmental nitrogen cycling and bioinspired catalysis. |
| 2. | Heme-based NiRs, including Hb, Mb, Ngb, and Cyb, are well-known for their primary function in oxygen transport. However, under hypoxic conditions, they also serve as NiRs, catalyzing the conversion of nitrite to NO [36–38]. This reaction is particularly crucial during tissue hypoxia, as it promotes vasodilation, regulates cellular respiration, and participates in signal transduction pathways [39,40]. In the absence of oxygen, the ferrous (Fe2+) center in deoxy-Hb exhibits a lower redox potential, enabling it to reduce nitrite to NO. During this process, as shown in Fig. 3B, nitrite binds to deoxy-Hb, forming a ferrous-nitrosyl-hemoglobin complex, which releases a water molecule to form a ferric-nitrosyl adduct. Subsequently, NO may react with another deoxy-Hb molecule to form a nitrosylated complex or be released directly as NO gas [41]. In some cases, the ferric heme can be reduced back to the ferrous state by cellular reductases or NADH-dependent reductases, allowing the heme protein to continue participating in nitrite reduction. This reaction can be summarized as: Fe2+-Hb + NO₂− + H+ → Fe3+-Hb + NO + OH−. The rate of this reaction is modulated by the conformational state of Hb, pH, and oxygen partial pressure. In the T state (deoxygenated form) of Hb, the ferrous center's redox potential is lower, favoring nitrite reduction. As the reaction progresses, some T state Hb transitions to the R state (oxygenated form), which has a higher redox potential, further enhancing nitrite reduction [39]. Therefore, Hb exhibits maximal NO generation rates at 40% to 60% oxygen saturation (near the P 50 value) [41]. Additionally, acidic environments (low pH) promote the protonation of nitrite, enhancing its binding to Hb and accelerating NO production [42]. This Hb-mediated nitrite reduction not only serves as a mechanism for oxygen and acidity sensing but also plays an important role in hypoxic vasodilation and NO signaling. Moreover, other heme-containing proteins, such as Mb, exhibit similar NiR activities and may regulate cellular responses to hypoxia in specific tissues [36–38]. These findings provide new insights into the multifunctionality of Hb under physiological and pathological conditions. |
| 3. | Molybdenum-based NiRs are a class of enzymes that utilize a molybdenum cofactor (MoCo) to catalyze the reduction of nitrite to NO. In mammals, several molybdenum-containing enzymes have been identified to possess NiR activity, including xanthine oxidase (XO), aldehyde oxidase (AO), sulfite oxidase (SO), and mitochondrial amidoxime-reducing component (mARC). These enzymes share a common catalytic mechanism but differ in their structural features and electron transfer pathways. The catalytic cycle begins with the binding of nitrite to the reduced molybdenum center of the enzyme. As shown in Fig. 3C, the Mo(VI) site of AO then interacts with nitrite to form a coordination complex [43]. Electron transfer from a suitable donor, such as nicotinamide adenine dinucleotide (NADH) or aldehydes, reduces the molybdenum from its hexavalent [Mo(VI)] to pentavalent [Mo(V)] state [44]. This reduction facilitates the transfer of electrons to the nitrite, leading to the formation of a nitrosonium ion (NO+). Protons (H+) are also transferred during this process, resulting in the production of NO and water [45]. The molybdenum center is then reoxidized to its Mo6+ state, ready for another catalytic cycle. |
| 1. | Coordination environment design and catalytic activity: The coordination environment of iron porphyrins is a crucial factor determining their catalytic activity [71,72]. Different porphyrin macrocyclic structures exhibit varying catalytic performances due to the distinct effects these structures have on the iron center's coordination environment. For instance, variations between heme c and sulfoheme can lead to changes in the electronic density and reduction potential of the iron center, thereby affecting nitrite reduction activity [73]. By synthesizing model complexes with similar structures, researchers can validate how fine-tuning these coordination environments impacts catalytic reactions, further simulating the natural functions of NiRs. |
| 2. | Electronic structure adjustment and catalytic efficiency: Adjusting the electronic structure of iron porphyrins is a key method for optimizing their catalytic performance. For example, introducing electron-withdrawing groups (such as halogens or nitro groups) onto the porphyrin macrocycle can reduce the electronic density at the iron center, enhancing its ability to reduce nitrite [74,75]. This adjustment directly influences the selectivity and Faradaic efficiency (FE) of iron porphyrins in the electrocatalytic reduction of nitrite. Research indicates that the reduction potential of iron porphyrins can be precisely tuned by these groups, optimizing their catalytic performance and remarkably enhancing reaction rates and selectivity. |
| 3. | Effect of group modifications on catalytic reactions: Group modifications, particularly the introduction of functional groups such as guanidyl groups, can remarkably enhance the catalytic activity of iron porphyrins. For instance, iron porphyrin complexes modified with guanidyl groups exhibit accelerated nitrite reduction reactions through proton transfer facilitated by these groups. This design mimics the proton transfer processes in natural NiRs and enables efficient reactions without external proton sources, demonstrating the critical role of guanidyl groups in the catalytic process [74]. Additionally, guanidyl modifications improve the selectivity and reaction rate of the complexes in NO generation, underscoring the importance of group modifications in optimizing catalytic performance. |
| 4. | Structural modification and catalytic enhancement in nanomaterials: Research has shown that loading iron(III) porphyrins onto nanostructured materials can remarkably enhance their catalytic activity for the 6-electron reduction of nitrite to ammonia [75]. Using ion self-assembly methods, researchers have prepared nanostructured materials with varying charges, which exhibit notable temperature dependence and light responsiveness in catalytic performance. These nanostructures not only improve the stability of iron porphyrins but also enhance their catalytic activity in reduction reactions. This example illustrates that incorporating nanomaterials can effectively boost the catalytic performance of iron porphyrin-based compounds. |
| 科 Family | 属数 Number of genus | 种数 Number of species | 占总种数比例 Percentage of total species (%) | 属 Genus | 种数 Number of species | 占总种数比例 Percentage of total species (%) |
|---|---|---|---|---|---|---|
| 鹅膏菌科Amanitaceae | 2 | 11 | 5.26 | 鹅膏菌属 Amanita | 10 | 4.78 |
| 小菇科 Mycenaceae | 2 | 12 | 5.74 | 丝盖伞属 Inocybe | 5 | 2.39 |
| 多孔菌科 Polyporaceae | 8 | 14 | 6.70 | 蜡蘑属 Laccaria | 5 | 2.39 |
| 红菇科 Russulaceae | 3 | 23 | 11.00 | 小皮伞属 Marasmius | 6 | 2.87 |
| 小菇属 Mycena | 11 | 5.26 | ||||
| 光柄菇属 Pluteus | 5 | 2.39 | ||||
| 红菇属 Russula | 17 | 8.13 | ||||
| 栓菌属 Trametes | 5 | 2.39 |