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Identification and Preliminary Functional Analysis of Dihydroflavonol 4-Reductase (DFR) Gene Family of Pineapple
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Yuanhao DUAN, Shijiao CUI, Xingjiang ZOU, Shipeng FENG
Chinese Journal of Tropical Crops | 2026, 47(2) : 291 - 301
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Chinese Journal of Tropical Crops | 2026, 47(2): 291-301
Omics & Biotechnology
Identification and Preliminary Functional Analysis of Dihydroflavonol 4-Reductase (DFR) Gene Family of Pineapple
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Yuanhao DUAN, Shijiao CUI, Xingjiang ZOU, Shipeng FENG
Affiliations
  • School of Tropical Agriculture and Forestry, Hainan University/Key Laboratory of Sustainable Utilization of Tropical Biological Resources, Haikou, Hainan 570228, China
Published: 2026-02-25 doi: 10.3969/j.issn.1000-2561.2026.02.002
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Pineapple (Ananas comosus) ranks as the world's third most important tropical fruit and is a significant economic crop in China's tropical regions. To investigate the role of the dihydroflavonol 4-reductase (DFR) gene family in anthocyanin accumulation in pineapple and provide a theoretical foundation for germplasm improvement, this study identified and preliminary functionally analyzed members of the pineapple DFR gene family. A total of 17 dihydroflavonol 4-reductase genes were identified in the whole genome of pineapple, which were named AcDFR1 to AcDFR17 and distributed unevenly on 10 chromosomes. AcDFRs encoded proteins ranging from 313 to 378 amino acids (aa) in length, with molecular weights between 34.73 and 47.74 kDa and isoelectric points (pI) from 5.10 to 8.9. The secondary structure of AcDFR proteins primarily consisted of α-helices and β-sheets, with α-helix content ranging from 38.73% to 43.07% and β-sheet content from 13.24% to 15.64%. Phylogenetic analysis revealed that the 17 AcDFRs formed four subfamilies. The motif arrangement and number of exons were similar among AcDFRs. The AcDFR genes promoter regions contained multiple cis-acting elements responsive to light, hormones, abiotic stress, growth and development. Real-time quantitative PCR analysis revealed significant expression variations of AcDFRs genes across different pineapple tissues (roots, stems, leaves, flowers, pulp, peel), though most genes exhibited high expression in both pulp and peel. Cloning and identification of AcDFRs revealed sequences largely consistent with predicted sequences. Subcellular localization studies of the AcDFR1 in tobacco leaves via transient expression indicated localization to the cytoplasm and cell membrane. The findings would provide theoretical references for further investigation into the functions of the dihydroflavonol-4-reductase gene family in pineapple and for pineapple quality improvement.

dihydroflavonol 4-reductase  /  pineapple  /  gene family  /  functional analysis
Yuanhao DUAN, Shijiao CUI, Xingjiang ZOU, Shipeng FENG. Identification and Preliminary Functional Analysis of Dihydroflavonol 4-Reductase (DFR) Gene Family of Pineapple[J]. Chinese Journal of Tropical Crops, 2026 , 47 (2) : 291 -301 . DOI: 10.3969/j.issn.1000-2561.2026.02.002
Year 2026 volume 47 Issue 2
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Article Info
doi: 10.3969/j.issn.1000-2561.2026.02.002
  • Receive Date:2025-10-10
  • Online Date:2026-06-26
  • Published:2026-02-25
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  • Received:2025-10-10
  • Accepted:2025-11-18
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    School of Tropical Agriculture and Forestry, Hainan University/Key Laboratory of Sustainable Utilization of Tropical Biological Resources, Haikou, Hainan 570228, China
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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