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Transcriptome Analysis and Nitrogen Metabolism Related Gene Mining of a Setaria viridis Mutant with Increased Biomass
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Lili ZHANG1, 2, Haixu ZHAO1, 2, Shuai HU1, 2, Shanshan HUO1, 2, Qiyu XIA1, 2, Anping GUO1, 2, Hui ZHAO1, 2, *
Chinese Journal of Tropical Crops | 2025, 46(4) : 853 - 865
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Chinese Journal of Tropical Crops | 2025, 46(4): 853-865
Omics & Biotechnology
Transcriptome Analysis and Nitrogen Metabolism Related Gene Mining of a Setaria viridis Mutant with Increased Biomass
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Lili ZHANG1, 2, Haixu ZHAO1, 2, Shuai HU1, 2, Shanshan HUO1, 2, Qiyu XIA1, 2, Anping GUO1, 2, Hui ZHAO1, 2, *
Affiliations
  • 1.Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences / Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-season Reproduction Regions, Sanya, Hainan 572024, China
  • 2.Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China
Published: 2025-04-25 doi: 10.3969/j.issn.1000-2561.2025.04.008
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Biomass is a key factor in plant evolutionary adaptation and yield, and obtaining high-yield crop varieties is always a basic requirement for crop breeding. In this study, a mutant Mu with increased biomass was discovered during the tissue culture of Setaria viridis ME34, and the trait can be stably inherited to the next generation. Through the observation of the phenotype of S. viridis and statistical analysis of the agronomic traits of seedlings and adults, it was found that the biomass (fresh and dry weight) of the mutant seedlings and the adult plant height of S. viridis mutant was significantly higher than that of the wild-type plants, and the spike length and seed length were also significantly longer than those of the S. viridis wild-type plants, reaching a highly significant level. Transcriptome sequencing was performed on the leaves and stems of ME34 and Mu, and some genes were validated by RT-PCR. Differential expression gene analysis revealed that the genes related to nitrogen metabolism and regulation accounted for about 20% of the total differential genes. GO functional and KEGG enrichment analysis also revealed a close relationship between biomass and nitrogen metabolism and regulation. The DEGseq method was used to analyze the changes in the differentially expressed genes, and some related genes involved in nitrogen absorption, transport, assimilation, and reuse were obtained, such as nitrate transporter NRT, ammonium transporter AMT, nitrate reductase NR, nitrite reductase NiR, glutamate synthase GOGAT, NLP family transcription factors, and serine threonine protein kinase. Through the above research, important molecular basis and foundation are provided for the breeding work of crops such as foxtail millet.

Setaria viridis  /  biomass  /  transcriptome sequencing  /  nitrogen utilization efficiency
Lili ZHANG, Haixu ZHAO, Shuai HU, Shanshan HUO, Qiyu XIA, Anping GUO, Hui ZHAO. Transcriptome Analysis and Nitrogen Metabolism Related Gene Mining of a Setaria viridis Mutant with Increased Biomass[J]. Chinese Journal of Tropical Crops, 2025 , 46 (4) : 853 -865 . DOI: 10.3969/j.issn.1000-2561.2025.04.008
Year 2025 volume 46 Issue 4
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Article Info
doi: 10.3969/j.issn.1000-2561.2025.04.008
  • Receive Date:2024-09-24
  • Online Date:2026-06-24
  • Published:2025-04-25
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History
  • Received:2024-09-24
  • Accepted:2024-11-19
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Affiliations
    1.Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences / Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-season Reproduction Regions, Sanya, Hainan 572024, China
    2.Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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