收藏切换
Identification and Characterization of Key MYB Transcription Factors Involved in Ocimum basilicum var. pilosum essential oil accumulation
收藏切换
PDF
Shiqi TANG, Shiman CAI, Jia WANG, Jun NIU*
Chinese Journal of Tropical Crops | 2025, 46(9) : 2063 - 2075
Less
收藏切换
Chinese Journal of Tropical Crops | 2025, 46(9): 2063-2075
Omics & Biotechnology
Identification and Characterization of Key MYB Transcription Factors Involved in Ocimum basilicum var. pilosum essential oil accumulation
Full
Shiqi TANG, Shiman CAI, Jia WANG, Jun NIU*
Affiliations
  • Hainan Provincial Key Laboratory of Tropical Ornamental Plant Resources Biology/School of Tropical Agriculture and Forestry, Hainan University, Danzhou, Hainan 571737, China
Published: 2025-09-25 doi: 10.3969/j.issn.1000-2561.2025.09.004
Outline
收藏切换

The MYB family constitutes one of the largest transcription factor families in plants, involving in plant growth and development, signal transduction, and secondary metabolism. Based on our previous 2+3 transcriptome data of Ocimum basilicum var. pilosum, we systematically identified the O. basilicum var. pilosum MYB (ObMYB) family through bioinformatics approaches and explored members associated with essential oil accumulation. Firstly, ObMYB members were screened by homologous alignment of MYB conserved domains, and then their complete open reading frames were predicted and the basic physicochemical properties of these encoded proteins were analyzed. Phylogenetic relationship was reconstructed by neighbor-joining method of MEGA 7.0, while conserved motifs and domains were annotated using MEME and Batch CD-Search. Subsequently, incorporating the previous miRNA data of O. basilicum var. pilosum, the targeted miRNA complementing the ObMYB were predicted by TargetFinder. Lastly, differential expression analysis and visualization analysis of heat maps were conducted by TBtools. Based on the essential oil data from different developmental stages of stems and leaves, the correlation analysis between differential gene expression levels and essential oil content was conducted using SPSS 25 to identify the potential ObMYB members involving in the accumulation of essential oil. The protein-protein interaction (PPI) network was constructed by STRING database for analyzing potential metabolic pathways involved. Research results revealed that a total of 77 ObMYB members were characterized, named as ObMYB-1 to ObMYB-77. Phylogenetic analysis divided them into eight subfamilies (classⅠ-Ⅷ), each comprising 6–14 members. These ObMYB proteins exhibited hydrophilic properties and structural stability, average isoelectric point=7.11 and average hydrophobicity=–0.69. Five miRNAs were found to target and regulate four ObMYB genes. Among these 43 differentially expressed ObMYB genes, ObMYB-4, -9, -27, -34, -42, -46 and -69 displayed strong correlations with essential oil accumulation. Moreover, PPI network analysis indicated the potential involvement of ObMYB-4, -9, -34, -36, -46 and -69 in flavonoid biosynthesis and secondary metabolite regulation. This study systematically identified the ObMYB family members and analyzed their relationship with essential oil accumulation, revealing multiple ObMYB genes significantly associated with the synthesis and accumulation of essential oils. These findings provide a significant theoretical basis for an in-depth understanding of the metabolic regulation mechanisms of O. basilicum var. pilosum essential oil, and to offer new targets and insights for research on plant secondary metabolism and the improvement of aromatic plant quality.

Ocimum basilicum var. pilosum  /  essential oil  /  MYB transcription factor  /  flavonoid biosynthesis
Shiqi TANG, Shiman CAI, Jia WANG, Jun NIU. Identification and Characterization of Key MYB Transcription Factors Involved in Ocimum basilicum var. pilosum essential oil accumulation[J]. Chinese Journal of Tropical Crops, 2025 , 46 (9) : 2063 -2075 . DOI: 10.3969/j.issn.1000-2561.2025.09.004
Year 2025 volume 46 Issue 9
PDF
67
31
Cite this Article
BibTeX
Article Info
doi: 10.3969/j.issn.1000-2561.2025.09.004
  • Receive Date:2025-05-08
  • Online Date:2026-03-07
  • Published:2025-09-25
Article Data
Affiliations
History
  • Received:2025-05-08
  • Accepted:2025-05-26
Funding
Affiliations
    Hainan Provincial Key Laboratory of Tropical Ornamental Plant Resources Biology/School of Tropical Agriculture and Forestry, Hainan University, Danzhou, Hainan 571737, China
References
Share
https://castjournals.cast.org.cn/joweb/rdzwxb/EN/10.3969/j.issn.1000-2561.2025.09.004
Share to
QR

Scan QR to access full text

Cite this article
BibTeX
Citations
表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
关闭全屏
  • BibTeX
  • EndNote
  • RefWorks
  • TxT