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Establishment and Application of TaqMan Fluorescence Quantitative PCR (TaqMan qPCR) Detection Method of Sri Lankan Cassava Mosaic Virus
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Jingshan HUANG1, 2, Guofen WANG2, Tao SHI2, Chaoping LI2, Yipeng CHEN2, Jimiao CAI2, Boxun LI2, Xianbao LIU2, Guixiu HUANG2, 3, *
Chinese Journal of Tropical Crops | 2025, 46(9) : 2056 - 2062
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Chinese Journal of Tropical Crops | 2025, 46(9): 2056-2062
Omics & Biotechnology
Establishment and Application of TaqMan Fluorescence Quantitative PCR (TaqMan qPCR) Detection Method of Sri Lankan Cassava Mosaic Virus
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Jingshan HUANG1, 2, Guofen WANG2, Tao SHI2, Chaoping LI2, Yipeng CHEN2, Jimiao CAI2, Boxun LI2, Xianbao LIU2, Guixiu HUANG2, 3, *
Affiliations
  • 1.College of Agriculture, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang 163319, China
  • 2.Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs/Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haokou, Hainan 571101, China
  • 3.Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences/State Key Laboratory of Tropical Crop Breeding, Sanya, Hainan 572024, China
Published: 2025-09-25 doi: 10.3969/j.issn.1000-2561.2025.09.003
Outline
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Sri Lankan cassava mosaic disease, caused by Sri Lankan cassava mosaic virus (SLCMV), is a recently emerging dangerous disease in China. Existing detection methods of SLCMV are constrained by low sensitivity and poor efficiency, impeding related research and applications. Primers and probes were designed according to the gene sequences of the SLCMV, and a positive plasmid standard was prepared. The TaqMan fluorescence quantitative detection technology for SLCMV was established, and its application effect was verified. The method only generated specific fluorescence signals for SLCMV DNA samples, and the minimum detectable amount of the positive plasmid standard was 4.5×101 copies/μL. The standard curve showed that there was a good linear relationship between the Ct value and the logarithm of the copy number. The slope of the curve was –3.1312, the correlation coefficient R2 was 0.9969, the amplification efficiency (E) was 97.9%, and the equation of the standard curve was y=–3.1312x+34.599. Using this technology to detect the tested samples from two cassava plantations in Guangxi and Fujian, the positive detection rate of leaves was 95.45% and 78.57%, respectively, and the minimum detectable copy number was 1.45×105 copies/g. The virus-carrying rate of Bemisia tabaci in the field was 86%, and the minimum virus-carrying amount was 9.42×104 copies/B. tabaci. This technology has good sensitivity, specificity, and repeatability, and could provide effective technical support for the monitoring and control work such as field identification, early diagnosis, and evaluation of virus-free stem cuttings of the disease.

cassava  /  Sri Lankan cassava mosaic virus  /  TaqMan qPCR
Jingshan HUANG, Guofen WANG, Tao SHI, Chaoping LI, Yipeng CHEN, Jimiao CAI, Boxun LI, Xianbao LIU, Guixiu HUANG. Establishment and Application of TaqMan Fluorescence Quantitative PCR (TaqMan qPCR) Detection Method of Sri Lankan Cassava Mosaic Virus[J]. Chinese Journal of Tropical Crops, 2025 , 46 (9) : 2056 -2062 . DOI: 10.3969/j.issn.1000-2561.2025.09.003
Year 2025 volume 46 Issue 9
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Article Info
doi: 10.3969/j.issn.1000-2561.2025.09.003
  • Receive Date:2025-04-01
  • Online Date:2026-03-07
  • Published:2025-09-25
Article Data
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History
  • Received:2025-04-01
  • Accepted:2025-05-22
Funding
Affiliations
    1.College of Agriculture, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang 163319, China
    2.Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Integrated Pest Management on Tropical Crops, Ministry of Agriculture and Rural Affairs/Hainan Key Laboratory for Monitoring and Control of Tropical Agricultural Pests, Haokou, Hainan 571101, China
    3.Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences/State Key Laboratory of Tropical Crop Breeding, Sanya, Hainan 572024, China
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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