Home Journals Articles Updates About
CN
image
收藏切换
Identification and Bioinformatics Analysis of Lysine-like Receptor Kinase LysM-RLK Gene Family Based on the Whole Genome of Papaya
收藏切换
PDF
Pan GUO1, 2, 3, Hua KONG2, 3, *, Yu WANG2, 3, Yunsu DAI4, Ruizong JIA2, 3, Yao ZHOU2, 3, Anping GUO2, 3, Changmian JI2, 3, *, Chunhua MA1, *
Chinese Journal of Tropical Crops | 2023, 44(5) : 867 - 879
Less
收藏切换
Chinese Journal of Tropical Crops | 2023, 44(5): 867-879
• Omics & Biotechnology •
Identification and Bioinformatics Analysis of Lysine-like Receptor Kinase LysM-RLK Gene Family Based on the Whole Genome of Papaya
Full
Pan GUO1, 2, 3, Hua KONG2, 3, *, Yu WANG2, 3, Yunsu DAI4, Ruizong JIA2, 3, Yao ZHOU2, 3, Anping GUO2, 3, Changmian JI2, 3, *, Chunhua MA1, *
Affiliations
  • 1.College of Landscape Architecture and Horticulture, Yunnan Agricultural University, Kunming, Yunnan 650201, China
  • 2.Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
  • 3.Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences/Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Haikou, Hainan 571101, China
  • 4.College of Tropical Crops, Hainan University, Haikou, Hainan 570228, China
Published: 2023-05-25 doi: 10.3969/j.issn.1000-2561.2023.05.001
Outline
收藏切换

In this study, seven LysM-RLK subfamily genes were systematically identified in the whole genome of papaya using bioinformatics methods, and the chromosome distribution, gene structure, protein physical and chemical properties, and subcellular localization information were analyzed. Familial evolutionary analysis showed that papaya LysM-RLK could be further divided into three subgroups (Lym-Ⅱ, Lym-Ⅲ, Lym-Ⅳ), distributed on four chromosomes. Recent gene replication is the main driver of the evolution of the papaya LysM-RLK subfamily. The analysis of promoter sequence regulatory elements found that it contained multiple photoresponse elements and elements involved in low temperature response and stress related hormone signal response. Large-scale comparative transcriptome analysis systematically analyzed the gene expression patterns of LysM-RLK under papaya biostress and abiotic stress and different tissues, revealing its specific expression patterns and potential biological functions. The expression differentiation of replicating gene pairs, differences in domain composition, and changes in the tertiary structure of proteins suggest subfunctionalization in the process of evolution. Core co-expression network analysis under biotic and abiotic stress conditions identified 27 core genes strongly associated with LysM-RLK3, revealing the potential transcriptional regulatory patterns of LysM-RLK3. The results would provide important insights into the evolution, functional differentiation and role of the papaya LysM-RLK subfamily in adversity response and growth and development.

papaya  /  LysM-RLK subfamily  /  bioinformatics analysis  /  gene expression  /  protein tertiary structure
Pan GUO, Hua KONG, Yu WANG, Yunsu DAI, Ruizong JIA, Yao ZHOU, Anping GUO, Changmian JI, Chunhua MA. Identification and Bioinformatics Analysis of Lysine-like Receptor Kinase LysM-RLK Gene Family Based on the Whole Genome of Papaya[J]. Chinese Journal of Tropical Crops, 2023 , 44 (5) : 867 -879 . DOI: 10.3969/j.issn.1000-2561.2023.05.001
Appendix
Less
Year 2023 volume 44 Issue 5
PDF
46
18
Cite this Article
BibTeX
Article Info
doi: 10.3969/j.issn.1000-2561.2023.05.001
  • Receive Date：2022-12-16
  • Online Date：2026-03-05
  • Published：2023-05-25
Article Data
Affiliations
History
  • Received：2022-12-16
  • Revised：2023-01-20
Funding
Affiliations
    1.College of Landscape Architecture and Horticulture, Yunnan Agricultural University, Kunming, Yunnan 650201, China
    2.Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
    3.Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences/Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Haikou, Hainan 571101, China
    4.College of Tropical Crops, Hainan University, Haikou, Hainan 570228, China
References
Share
https://castjournals.cast.org.cn/joweb/rdzwxb/EN/10.3969/j.issn.1000-2561.2023.05.001
Share to
QR

Scan QR to access full text

Cite this article
BibTeX
Citations
表12种不同金属材料的力学参数
科
Family		 属数
Number of
genus		 种数
Number of
species		 占总种数比例
Percentage of
total species (%)		 属
Genus		 种数
Number of
species		 占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
关闭全屏
  • BibTeX
  • EndNote
  • RefWorks
  • TxT
Links
Articles
Latest Articles
Most Read
Collections
Updates
Events
News
Multimedia
About
About Us
Contact
No. 86 Xueyuan South Road, Haidian District, Beijing
100081
010-62199257
qkjq@cast.org.cn

Copyright © 2025 China Association for Science and Technology. All rights reserved. For all open access content, the relevant licensing terms apply.
Sponsored by the Office of the Leading Group for Cybersecurity and Informatization of CAST, and supported by Science and Technology Review Publishing House