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Identification, Bioinformatics and Expression Analysis of Taro Starch Branching Enzyme Genes
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Weiqing DONG1, Lili LIU2, Huiping JIANG1, Zuyang QIU2, Fanglian HE1, *
Chinese Journal of Tropical Crops | 2023, 44(7) : 1373 - 1382
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Chinese Journal of Tropical Crops | 2023, 44(7): 1373-1382
Omics & Biotechnology
Identification, Bioinformatics and Expression Analysis of Taro Starch Branching Enzyme Genes
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Weiqing DONG1, Lili LIU2, Huiping JIANG1, Zuyang QIU2, Fanglian HE1, *
Affiliations
  • 1.Biotechnology Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi 530007, China
  • 2.Lipu Bureau of Agriculture and Rural Affairs, Lipu, Guangxi 546600, China
Published: 2023-07-25 doi: 10.3969/j.issn.1000-2561.2023.07.007
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Starch branching enzyme (SBE) play a key role in amylopectin biosynthesis and directly influence the content and structure of starch. Taro is a major tuber crop, widely cultivated in tropical and subtropical regions of the world. At present, there are few studies on SBE in taro, and the number, molecular structural characteristics and expression patterns of SBE genes in taro are not clear. In this study, a comprehensive analysis of taro SBE genes was conducted for the first time, and three SBE genes (CeSBE1, CeSBE2 and CeSBE3) were identified. The amino acid numbers of CeSBE1, CeSBE2 and CeSBE3 proteins was 828, 845 and 598, respectively, with molecular mass of 92 956.71 Da, 95 625.13 Da and 69 169.16 Da, and isoelectric point of 5.22, 5.41 and 7.36, respectively. Phylogenetic analysis showed that the three CeSBE proteins were divided into three different subgroups. Gene structure analysis showed that the number of CeSBE1, CeSBE2 and CeSBE3 exons was 16, 22 and 10, respectively. Conservative structural domain analysis showed that both CeSBE1 and CeSBE2 proteins had α-amylase_C and α-amylase structural domains and 7 motifs, while CeSBE3 protein had α-amylase and CBM_48 structural domains and 3 motifs. Analysis of cis-acting elements in the promoter region of CeSBE gene showed that a total of 55 cis-acting elements were predicted, 29 of which were functionally annotated, involving elements related to light response, hormone response, plant growth and development, and environmental stress. The three CeSBE genes were expressed in all tissues, with CeSBE2 being significantly expressed in corms and leaves (P<0.05). At different developmental stages of the corm, CeSBE2 had high expression at all developmental stages, showing a trend of increasing and then decreasing expression, with peak expression at 120 d of corm development. The increase in total starch and amylopectin content at different developmental stages of the corm was consistent with the trend of CeSBE2 expression, suggesting that CeSBE2 may be a key gene for amylopectin biosynthesis in taro. The study would enhance the understanding of CeSBE gene family members and provide the basis for genetic improvement of yield, quality and nutritional traits in taro.

taro  /  starch branching enzyme  /  bioinformatics analysis  /  expression analysis
Weiqing DONG, Lili LIU, Huiping JIANG, Zuyang QIU, Fanglian HE. Identification, Bioinformatics and Expression Analysis of Taro Starch Branching Enzyme Genes[J]. Chinese Journal of Tropical Crops, 2023 , 44 (7) : 1373 -1382 . DOI: 10.3969/j.issn.1000-2561.2023.07.007
Year 2023 volume 44 Issue 7
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doi: 10.3969/j.issn.1000-2561.2023.07.007
  • Receive Date:2022-08-03
  • Online Date:2026-03-05
  • Published:2023-07-25
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  • Received:2022-08-03
  • Revised:2022-09-05
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Affiliations
    1.Biotechnology Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi 530007, China
    2.Lipu Bureau of Agriculture and Rural Affairs, Lipu, Guangxi 546600, China
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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