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Construction of DNA Fingerprint of 19 Mango Cultivars (lines) Based on SSR Molecular Markers
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Rong LIU1, Zhengxue ZHANG1, Qingguo LIU1, *, Zhiguo DANG2, Xiaobo WU1, Hai HUANG1
Chinese Journal of Tropical Crops | 2023, 44(9) : 1745 - 1753
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Chinese Journal of Tropical Crops | 2023, 44(9): 1745-1753
Omics & Biotechology
Construction of DNA Fingerprint of 19 Mango Cultivars (lines) Based on SSR Molecular Markers
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Rong LIU1, Zhengxue ZHANG1, Qingguo LIU1, *, Zhiguo DANG2, Xiaobo WU1, Hai HUANG1
Affiliations
  • 1. Guizhou Institute of Subtropical Crops, Guiyang, Guizhou 550006, China
  • 2. Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China
Published: 2023-09-25 doi: 10.3969/j.issn.1000-2561.2023.09.002
Outline
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Mangifera indica Linn. is a tropical and subtropical evergreen tree fruit, sweet fruit, rich nutrition, meat smooth and juicy, which is rich "tropical fruit king" reputation. In order to speed up the molecular identification of mango cultivars (lines), five mango cultivars (Red Ivory Mango, Jinhuang Mango, Red Mango No. 6, Red Jade Mango, Nan Doc Mai No. 4 Mango) with different phenotypic characteristics were selected from 19 test materials to screen SSR marker primers. The primers with better polymorphism were obtained by PAGE electrophoresis. Then, the primers were labeled with 5'-end modification with HEX and FAM fluorescent labels. The size of the amplified fragments were detected by capillary electrophoresis, and the polymorphic sites of each pair of primers were coded by numbers and letters. Finally, DNA fingerprint and DNA molecular ID card of mango were constructed by capillary electrophoresis. The results show that nine pairs of primers with good polymorphism were screened from the developed SSR primers from 115 pair primers through PCR amplification and PAGE electrophoresis. The primers were named M9, M15, M35, M40, M53, M59, M101, M102, and M103. After capillary electrophoresis detection and data analysis, bar code DNA molecular identification and quick response code DNA molecular identification of the mango cultivars (lines) were obtained combined with "number+letter" processing. For example, the fingerprint code of Jinhuang Mango is 9EE9F8933, the fingerprint code of Qianshan Mango No. 2 is H6F7564IC, and the fingerprint code of Qianshan Mango No. 4 is 3DGE47279. Finally, with the fingerprint code and basic information of 19 materials as the carrier, barcode DNA molecular ID and two-dimensional code DNA molecular ID were generated by online barcode generation program and two-dimensional code generation program. This study laid a foundation for standardizing the construction of molecular identification database of DNA of mango, and could provide data reference for mango genetics and breeding and excellent gene excavating.

mango  /  SSR markers  /  capillary eletrophoresis  /  DNA fingerprint  /  DNA molecular identification
Rong LIU, Zhengxue ZHANG, Qingguo LIU, Zhiguo DANG, Xiaobo WU, Hai HUANG. Construction of DNA Fingerprint of 19 Mango Cultivars (lines) Based on SSR Molecular Markers[J]. Chinese Journal of Tropical Crops, 2023 , 44 (9) : 1745 -1753 . DOI: 10.3969/j.issn.1000-2561.2023.09.002
Year 2023 volume 44 Issue 9
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Article Info
doi: 10.3969/j.issn.1000-2561.2023.09.002
  • Receive Date:2022-08-01
  • Online Date:2026-03-05
  • Published:2023-09-25
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  • Received:2022-08-01
  • Revised:2022-10-21
Funding
Affiliations
    1. Guizhou Institute of Subtropical Crops, Guiyang, Guizhou 550006, China
    2. Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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