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Molecular Cloning and Characterization of CeTIP2;1, an Aquaporin Gene from Tigernut (Cyperus esculentus L.)
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Zhi ZOU, Yujiao ZHENG
Chinese Journal of Tropical Crops | 2024, 45(8) : 1552 - 1559
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Chinese Journal of Tropical Crops | 2024, 45(8): 1552-1559
Omics & Biotechnology
Molecular Cloning and Characterization of CeTIP2;1, an Aquaporin Gene from Tigernut (Cyperus esculentus L.)
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Zhi ZOU, Yujiao ZHENG
Affiliations
  • National Key Laboratory for Tropical Crop Breeding / Institute of Tropical Biosciences and Biotechnology, Chinese Academy of Tropical Agricultural Sciences / Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China
Published: 2024-08-25 doi: 10.3969/j.issn.1000-2561.2024.08.004
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Tigernut (Cyperus esculentus L.), most likely originated from Africa and Mediterranean, represents a novel herbaceous oil crop accumulating high levels of oil in its underground tubers. Water balance is essential for tuber development and metabolism in tigernut. Tonoplast intrinsic proteins (TIPs), which include five phylogenetic groups (i.e. TIP1–5), constitute a subfamily of aquaporin facilitating the fast and passive transport of water across vacuolar membranes. Based on available genome and transcriptome data, one TIP gene named CeTIP2;1 was isolated from tigernut tubers by using the RT-PCR technique. Sequence analysis showed that the full gene length of CeTIP2;1 is 3323 bp, including two introns with a coding sequence of 747 bp; the gene was predicted to encode 248 amino acids with the theoretical molecular weight of 24.73 kDa, the isoelectric point of 5.09, the grand average of hydropathicity of 0.948, the aliphatic index of 114.60, and the instability index of 21.76, implying its stable, acidic, and hydrophobic features, which is consistent with its tonoplast-localization; presence of one conservative MIP domain was observed, which possesses six transmembrane helices, two half helices, and two typical NPA motifs. CeTIP2;1 was shown to exhibit the sequence similarity of 87.20% with AtTIP2;1, which was considerably higher than 46.23% with SoPIP2;1. Further phylogenetic analysis revealed that CeTIP2;1 belongs to the TIP2 group and is a true ortholog of AtTIP2;1. Interestingly, the phylogenetic analysis also supported that TIP2 has diverged into two subgroups sometime before monocot-eudicot divergence. Tissue-specific expression analysis showed that CeTIP2;1 was highly expressed in all tissues examined in this study, i.e., leaf, sheath, root, shoot apex, rhizome, and tuber, with most in tuber/rhizome and lowest in shoot apex. A bell-like expression pattern was observed during tuber development, peaking at the medium stage of swelling and lowest in maturation. Moreover, CeTIP2;1 was also detected in the tuber proteomes, implying its high abundance and key roles. These findings would lay a solid foundation for further uncovering the mechanism of water balance in tigernut tubers.

oil crop  /  tuber  /  tonoplast intrinsic protein  /  phylogenetic analysis  /  expression profile
Zhi ZOU, Yujiao ZHENG. Molecular Cloning and Characterization of CeTIP2;1, an Aquaporin Gene from Tigernut (Cyperus esculentus L.)[J]. Chinese Journal of Tropical Crops, 2024 , 45 (8) : 1552 -1559 . DOI: 10.3969/j.issn.1000-2561.2024.08.004
Year 2024 volume 45 Issue 8
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doi: 10.3969/j.issn.1000-2561.2024.08.004
  • Receive Date:2023-07-20
  • Online Date:2026-06-23
  • Published:2024-08-25
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  • Received:2023-07-20
  • Revised:2023-08-28
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    National Key Laboratory for Tropical Crop Breeding / Institute of Tropical Biosciences and Biotechnology, Chinese Academy of Tropical Agricultural Sciences / Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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