To screen novel molecular glues targeting ovarian tumor domain deubiquitinase with linear linkage specificity (OTULIN) and provide a new therapeutic strategy for gastric cancer.
Gastric cancer cell lines with high OTULIN expression (AGS-NC, SNU601-NC) and OTULIN-knockout cells (AGS-sgOTULIN, SNU601-sgOTULIN) were used. Experimental groups included: control (DMSO), LTL-04-061 concentration gradients (0.1, 0.3, 1.0, 3.0, 5.0, 7.0, 10.0 μmol/L), and proteasome inhibitor intervention (MG-132/MLN4924+5 μmol/L LTL-04-061). OTULIN protein expression was analyzed by Western blotting, while mRNA levels were quantified by qPCR. Protein interactions were validated by co-immunoprecipitation (Co-IP). Molecular docking and 100 ns molecular dynamics (MD) simulations were performed to analyze complex conformations. Anti-proliferative effects were assessed using CCK-8, cell proliferation, and colony formation assays.
LTL-04-061 degraded OTULIN protein in a concentration-dependent manner (0.1 to 10.0 μmol/L), with significant degradation at 5 μmol/L. At this concentration, OTULIN mRNA levels remained unchanged (P>0.05). Degradation was blocked by MG-132/MLN4924, indicating dependence on the CRBN-mediated ubiquitin-proteasome pathway. Co-IP confirmed LTL-04-061-induced OTULIN-CRBN ternary complex formation. Key interactions involved OTULIN HIS339 and CRBN TRP378/HIS380. MD simulations showed stable complex conformation after 50 ns (RMSD fluctuation <0.1 nm), sustained hydrogen bonds (80 to 100 ns), and stable radius of gyration (Rg) and solvent-accessible surface area (SASA), indicating no structural expansion/collapse. LTL-04-061 concentration-dependently suppressed gastric cancer cell proliferation and colony formation. CCK-8 assays revealed IC50 values of 8.95 μmol/L (AGS) and 11.70 μmol/L (SNU601). OTULIN knockout significantly attenuated this inhibition (P<0.01).
OTULIN exerts pro-oncogenic effects in gastric cancer. The molecular glue LTL-04-061 targets OTULIN for CRBN-dependent ubiquitin-proteasomal degradation, thereby suppressing malignant proliferation. This identifies LTL-04-061 as a promising precursor for molecularly targeted gastric cancer therapy.
| 科 Family | 属数 Number of genus | 种数 Number of species | 占总种数比例 Percentage of total species (%) | 属 Genus | 种数 Number of species | 占总种数比例 Percentage of total species (%) |
|---|---|---|---|---|---|---|
| 鹅膏菌科Amanitaceae | 2 | 11 | 5.26 | 鹅膏菌属 Amanita | 10 | 4.78 |
| 小菇科 Mycenaceae | 2 | 12 | 5.74 | 丝盖伞属 Inocybe | 5 | 2.39 |
| 多孔菌科 Polyporaceae | 8 | 14 | 6.70 | 蜡蘑属 Laccaria | 5 | 2.39 |
| 红菇科 Russulaceae | 3 | 23 | 11.00 | 小皮伞属 Marasmius | 6 | 2.87 |
| 小菇属 Mycena | 11 | 5.26 | ||||
| 光柄菇属 Pluteus | 5 | 2.39 | ||||
| 红菇属 Russula | 17 | 8.13 | ||||
| 栓菌属 Trametes | 5 | 2.39 |