The dilemma of the transformation of scientific and technological achievements in Chinese universities is manifested that the large investment of scientific and technological innovation funds has not led to a significant improvement in transformation efficiency. The key to solving this dilemma is to identify the different effects of various influencing factors in the process of transforming. The provincial panel data of Chinese universities and the Global Malmquist index method were used to measure the transformation efficiency. Based on the theory of digital intelligence platform for the transformation of scientific and technological achievements in universities, the significant impact of external macro environmental factors and internal meso organizational factors on the efficiency of scientific and technological achievements transformation in universities were examined. The conclusion shows that internal meso organizational factors significantly affect the improvement of the transformation efficiency, while external macro environmental factors do not have a significant impact on the transformation efficiency. There is a mismatch phenomenon between Significance, effectiveness of influencing factors and funding direction.