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Identification of CsAK as a critical caffeine-related upstream gene in tea accessions through genome-wide association study
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Journal of Integrative Agriculture | 2026, 25(4) : 1519 - 1530
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Journal of Integrative Agriculture | 2026, 25(4): 1519-1530
• Horticulture •
Identification of CsAK as a critical caffeine-related upstream gene in tea accessions through genome-wide association study
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Kaixin Rao1, Yuting Ouyang1, Yanjun Chen1, Xiaojing Wang1,2, Ting Liu3, Qinfei Song1, Shaojuan Zhang1,2, Biao Xiong1, Suzhen Niu1,2#
Affiliations
    1College of Tea Science/Institute of Agro-Bioengineering, Guizhou University, Guiyang 550025, China
    2The Key Laboratory of Plant Resources Conservation and Germplasm Innovation in the Mountainous Region (Ministry of Education), Guiyang 550025, China
    3Zhengzhou Foreign Language School, Zhengzhou 450006, China
About Author:
Kaixin Rao, E-mail: 1778424029@qq.com; #Correspondence Suzhen Niu, E-mail: niusuzhen@163.com
doi: 10.1016/j.jia.2025.06.026
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Caffeine (CAF), a primary flavor component in tea, is one of the main reasons for the popularity of tea beverages. As an important secondary metabolite in tea plants, the CAF content varied greatly among different tea accessions. However, the genetic mechanisms underlying the CAF biosynthesis were still unclear. In this study, we performed a genome-wide association study (GWAS) on 359 tea accessions in the Guizhou Plateau to identify genetic variation associated with CAF content. A total of 19 significant single nucleotide polymorphisms (SNPs) and key gene (CsAK) involved in CAF biosynthesis were identified. Subcellular localization revealed that the CsAK-GFP fusion protein was located on the cell membrane. Antisense oligodeoxynucleotide (AsODN) targeting the CsAKgene to the buds and leaves revealed that the expression levels of the CsAKgene were significantly reduced, and the corresponding CAF content was also decreased in AsODN-treated tea plants. Overexpression of the CsAKgene in eukaryotic cells resulted in the accumulation of key intermediate product (L-methionine) during CAF biosynthesis process. These findings offered a theoretical foundation for future tea breeding programs aimed at cultivating excellent germplasm with high or low levels of CAF.
grapevine  /  physiological change  /  transcriptome  /  drought stress  /  VvMYBPA1
. 通过全基因组关联分析鉴定茶树中关键的咖啡碱相关上游基因CsAK. 农业科学学报(英文版), 2026 , 25 (4) : 1519 -1530 . DOI: 10.1016/j.jia.2025.06.026
Kaixin Rao, Yuting Ouyang, Yanjun Chen, Xiaojing Wang, Ting Liu, Qinfei Song, Shaojuan Zhang, Biao Xiong, Suzhen Niu. Identification of CsAK as a critical caffeine-related upstream gene in tea accessions through genome-wide association study[J]. Journal of Integrative Agriculture, 2026 , 25 (4) : 1519 -1530 . DOI: 10.1016/j.jia.2025.06.026
Year 2026 volume 25 Issue 4
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doi: 10.1016/j.jia.2025.06.026
  • Online Date:2026-10-27
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表12种不同金属材料的力学参数
科
Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)
属
Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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