Marine microorganisms, characterized by their immense biomass, rapid environmental response, and crucial ecological functions, serve as sensitive indicators for assessing the health of marine ecosystems. This article provides a systematic review of recent advances in marine ecological monitoring and health assessment based on microbial communities. First, we discussed the key characteristics of marine microorganisms as bioindicators, such as their high sensitivity to environmental stress and their functional redundancy in maintaining ecosystem processes. Case studies are presented to highlight the successful use of microbial monitoring to address climate change, pollution events, and ecological disasters. Next, we reviewed the evolution of marine microbial monitoring technologies, spanning from traditional cultivation methods to modern techniques such as high-throughput sequencing and Raman spectroscopy. We also compared the advantages and limitations of these approaches in practical applications. Finally, in response to challenges such as insufficient data standardization and the lack of quantitative assessment metrics, we proposed a systematic framework for future development. This framework emphasizes the need for end-to-end standardization from sampling to data analysis, the creation of intelligent diagnostic models that integrate multi-dimensional “Raman spectroscopy-genetic-environmental” information with the establishment of a national-scale specialized monitoring network. This review aims to provide theoretical supports and technical pathways for the development of a next-generation, high-resolution, real-time microbial-based marine ecological health assessment system.
| 科 Family | 属数 Number of genus | 种数 Number of species | 占总种数比例 Percentage of total species (%) | 属 Genus | 种数 Number of species | 占总种数比例 Percentage of total species (%) |
|---|---|---|---|---|---|---|
| 鹅膏菌科Amanitaceae | 2 | 11 | 5.26 | 鹅膏菌属 Amanita | 10 | 4.78 |
| 小菇科 Mycenaceae | 2 | 12 | 5.74 | 丝盖伞属 Inocybe | 5 | 2.39 |
| 多孔菌科 Polyporaceae | 8 | 14 | 6.70 | 蜡蘑属 Laccaria | 5 | 2.39 |
| 红菇科 Russulaceae | 3 | 23 | 11.00 | 小皮伞属 Marasmius | 6 | 2.87 |
| 小菇属 Mycena | 11 | 5.26 | ||||
| 光柄菇属 Pluteus | 5 | 2.39 | ||||
| 红菇属 Russula | 17 | 8.13 | ||||
| 栓菌属 Trametes | 5 | 2.39 |