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Biosynthesis and chemical synthesis of ribosomally synthesized and post-translationally modified peptides containing aminovinyl cysteine
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Xiangqian XIE1, Wen GUO1, Huan WANG1, Jin LI1, 2
Synthetic Biology Journal | 2024, 5(5) : 981 - 996
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Synthetic Biology Journal | 2024, 5(5): 981-996
Invited Review
Biosynthesis and chemical synthesis of ribosomally synthesized and post-translationally modified peptides containing aminovinyl cysteine
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Xiangqian XIE1, Wen GUO1, Huan WANG1, Jin LI1, 2
Affiliations
  • 1 State Key Laboratory of Coordination Chemistry,Chemistry and Biomedicine Innovation Center of Nanjing University,Jiangsu Key Laboratory of Advanced Organic Materials,School of Chemistry and Chemical Engineering,Nanjing University,Nanjing 210093,Jiangsu,China
  • 2 PharmaBlock Sciences (Nanjing),INC. ,Nanjing 210032,Jiangsu,China
Published: 2024-10-31 doi: 10.12211/2096-8280.2024-037
Outline
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Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a major class of peptide natural products that often contain noncanonical amino acids and structural motifs with promising potential as drug leads. One unique structural unit found in RiPPs is the C-terminal S-[(Z)-2-aminoethenyl]-D-cysteine (AviCys) or (2S,3S)-S-[(Z)-2-aminoethenyl]-3-methyl-D-cysteine (AviMeCys). Avi(Me)Cys-containing RiPPs usually exhibit potent antimicrobial or anticancer activities, which strictly require the presence of the C-terminal AviCys motifs. Despite the potential of Avi(Me)Cys-containing RiPPs as drug leads, lack of synthetic methods and biosynthetic systems to access these type of cyclic peptides impede the application of Avi(Me)Cys-containing peptides in medicinal chemistry. In this review, we summarize the current understanding of the biosynthesis of Avi(Me)Cys-containing peptides and the progress made in the development of chemical methods to synthesize Avi(Me)Cys motifs and derivatives. This review contains two following major sections: ① The biosynthetic process of Avi(Me)Cys motifs in the different families of Avi(Me)Cys-containing RiPPs, including lanthipeptides, lipolanthines, linaridins and thioamitides, are introduced with three essential enzymatic steps: first, a cysteine decarboxylase oxidatively decarboxylated the C-terminal cysteine, generating a highly reactive enethiol; subsequently, distinct enzymes catalyze the dehydration of a serine/threonine (Ser/Thr) residue or the dethiolation of a Cys residue in the precursor peptide by incorporating a dehydroalanine (Dha) or dehydrobutyrine (Dhb) residue; finally, a putative cyclase catalyzes the Michael-type addition between the enethiol group and a Dha/Dhb residue to yield the Avi(Me)Cys motif. Detailed enzymatic investigation of these biosynthetic steps are introduced. ② The chemical synthesis of the Avi(Me)Cys building block and their analogues via diverse synthetic methodology, including the radical thiol-yne coupling, the oxidative decarboxylation/decarbonylation, and the condensation of amides with acetals. Overall, further elucidation of the complete biosynthetic pathway for Avi(Me)Cys motifs in related RiPPs, along with advancements in the chemical synthesis of Avi(Me)Cys-containing natural product peptides, will facilitate the effective utilization of these bioactive peptide natural products.

RiPPs  /  natural products  /  aminovinyl cysteine  /  biosynthesis  /  chemical synthesis
Xiangqian XIE, Wen GUO, Huan WANG, Jin LI. Biosynthesis and chemical synthesis of ribosomally synthesized and post-translationally modified peptides containing aminovinyl cysteine[J]. Synthetic Biology Journal, 2024 , 5 (5) : 981 -996 . DOI: 10.12211/2096-8280.2024-037
Year 2024 volume 5 Issue 5
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doi: 10.12211/2096-8280.2024-037
  • Receive Date:2024-04-17
  • Online Date:2025-07-07
  • Published:2024-10-31
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  • Received:2024-04-17
  • Revised:2024-07-26
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Affiliations
    1 State Key Laboratory of Coordination Chemistry,Chemistry and Biomedicine Innovation Center of Nanjing University,Jiangsu Key Laboratory of Advanced Organic Materials,School of Chemistry and Chemical Engineering,Nanjing University,Nanjing 210093,Jiangsu,China
    2 PharmaBlock Sciences (Nanjing),INC. ,Nanjing 210032,Jiangsu,China
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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