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Strategies for the design and optimization of tumor neoantigen vaccines
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Huiyang TU1, 2, Weidong HAN1, Bin ZHANG3
Synthetic Biology Journal | 2024, 5(2) : 254 - 266
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Synthetic Biology Journal | 2024, 5(2): 254-266
Invited Review
Strategies for the design and optimization of tumor neoantigen vaccines
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Huiyang TU1, 2, Weidong HAN1, Bin ZHANG3
Affiliations
  • 1 Department of Biotherapy,the First Medical Center,Chinese PLA General Hospital,Beijing 100039,China
  • 2 Department of Oncology,Jiujiang No. 1 People’s Hospital,Jiujiang 332000,Jiangxi,China
  • 3 Senior Department of Hematology,the Fifth Medical Center of Chinese PLA General Hospital,Beijing Key Laboratory of Hematopoietic Stem Cell Therapy and Translational Research,Beijing 100071,China
Published: 2024-04-30 doi: 10.12211/2096-8280.2023-060
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With the research progress and clinical application of immune checkpoint inhibitors and chimeric antigen receptor T-cell therapies, immunotherapy has substantially changed the treating modalities for various tumors. Tumor neoantigen vaccines, as a promising immunotherapy method, aim to trigger a novel T cell response against neoantigens. Neoantigens, with their high specificity, can induce and expand the tumor-specific T cell receptor repertoire, which were discovered through the second-generation sequencing of DNA extracted from both the patient’s tumor and non-tumor tissue samples. The sequences and HLA types are then analyzed for alignment to pinpoint tumor-specific mutations. To validate the significance of these mutations, RNA sequencing data are integrated with the results. Subsequently, bioinformatics platforms are employed for the prediction and analysis of neoantigens encoded by mutated genes and HLA types, enabling the identification of potential immunogenic neoantigens. Finally, the immunogenicity of these neoantigens is assessed through techniques such as ELISPOT and tetramer assays. Tumor vaccines can be categorized as peptide-based, DNA-based, RNA-based, and DC-based products. Viruses, lipid nanoparticles, and nano delivery systems can activate antigen-presenting cells, enhancing their ability to recognize and present tumor-associated antigens, thus promoting the activation of CD8+ T cells. Neoantigen vaccines can be administered through various routes, including subcutaneous injection, intramuscular injection, intraperitoneal injection, intradermal injection, intravenous injection, or intralymphatic injection. Preliminary clinical studies have shown that neoantigen tumor vaccines have demonstrated evidence of strong tumor-specific immunogenicity and antitumor activity. In this review, we summarize in detail the source, prediction, and identification of tumor neoantigens, as well as the classification and immunization scheme of neoantigen vaccines. In addition, we highlight strategies for optimizing tumor neoantigen vaccines, including prediction algorithms, expressing multiple epitope structures, increasing immunogenicity, administration methods and delivery systems, and combining adjuvants and various treatments, providing new insights for the development of personalized immunotherapy.

neoantigens  /  tumor vaccines  /  immunotherapy  /  biosynthesis  /  personal therapy
Huiyang TU, Weidong HAN, Bin ZHANG. Strategies for the design and optimization of tumor neoantigen vaccines[J]. Synthetic Biology Journal, 2024 , 5 (2) : 254 -266 . DOI: 10.12211/2096-8280.2023-060
Year 2024 volume 5 Issue 2
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Article Info
doi: 10.12211/2096-8280.2023-060
  • Receive Date:2023-08-25
  • Online Date:2025-07-07
  • Published:2024-04-30
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History
  • Received:2023-08-25
  • Revised:2023-11-12
Affiliations
    1 Department of Biotherapy,the First Medical Center,Chinese PLA General Hospital,Beijing 100039,China
    2 Department of Oncology,Jiujiang No. 1 People’s Hospital,Jiujiang 332000,Jiangxi,China
    3 Senior Department of Hematology,the Fifth Medical Center of Chinese PLA General Hospital,Beijing Key Laboratory of Hematopoietic Stem Cell Therapy and Translational Research,Beijing 100071,China
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Number of
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鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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