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Synthetic genetic circuit engineering: principles, advances and prospects
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Ge GAO1, 2, Qi BIAN1, 2, Baojun WANG1, 2
Synthetic Biology Journal | 2025, 6(1) : 45 - 64
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Synthetic Biology Journal | 2025, 6(1): 45-64
Invited Review
Synthetic genetic circuit engineering: principles, advances and prospects
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Ge GAO1, 2, Qi BIAN1, 2, Baojun WANG1, 2
Affiliations
  • 1 College of Chemical and Biological Engineering,Zhejiang University,Hangzhou 310058,Zhejiang,China
  • 2 ZJU-Hangzhou Global Scientific and Technological Innovation Center,Zhejiang University,Hangzhou 311200,Zhejiang,China
Published: 2025-01-31 doi: 10.12211/2096-8280.2023-096
Outline
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Synthetic genetic circuits are engineered gene networks comprised of redesigned genetic parts for interacting to perform customized functions in cells. With the rapid development of synthetic biology, synthetic genetic circuits have shown significant application potentials in many fields such as biomanufacturing, healthcare and environmental monitoring. However, the efforts to scale up genetic circuits are hindered by the limited number of orthogonal parts, the difficulty of functionally composing large-scale circuits, and the poor predictability of circuit behaviors. A longstanding goal of synthetic biology research is to engineer complex synthetic biological circuits, using modular genetic parts, as we do with electronic circuits. Synthetic biologists have developed various genetic toolboxes and functional assembly methods over the past few decades. Here we present an overview of the latest advances, challenges, and future prospects in genetic circuit engineering from four aspects corresponding to the four key engineering principles for circuit design, i.e. orthogonality, standardization, modularity, and automation. Firstly, the design and construction of orthogonal genetic part libraries are discussed in both prokaryotes and eukaryotes at the levels of DNA replication, transcription, and translation, respectively. Standardized characterization methods and the design of modular genetic parts are subsequently summarized. Furthermore, progress in developing modular genetic circuits are presented, providing new concepts and ways for engineering increasingly large and complex circuits. Finally, how to achieve automated design and building of genetic circuits are addressed from the advances in software, hardware and artificial intelligence, respectively, with an aim to replacing the presently time-consuming manual trial-and-error mode with the iterative "design-build-test-learn" cycle for improved efficiency and predictability of circuit design. The integration of these fundamental principles and the latest advances in information technology such as artificial intelligence and lab automation will accelerate the paradigm shift in genetic circuit engineering and synthetic biology research, making it feasible for designing synthetic lives to meet various customized needs.

synthetic biology  /  genetic circuit design  /  orthogonality  /  standardization  /  modularity  /  automation
Ge GAO, Qi BIAN, Baojun WANG. Synthetic genetic circuit engineering: principles, advances and prospects[J]. Synthetic Biology Journal, 2025 , 6 (1) : 45 -64 . DOI: 10.12211/2096-8280.2023-096
Year 2025 volume 6 Issue 1
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Article Info
doi: 10.12211/2096-8280.2023-096
  • Receive Date:2023-12-01
  • Online Date:2025-07-06
  • Published:2025-01-31
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  • Received:2023-12-01
  • Revised:2024-04-10
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Affiliations
    1 College of Chemical and Biological Engineering,Zhejiang University,Hangzhou 310058,Zhejiang,China
    2 ZJU-Hangzhou Global Scientific and Technological Innovation Center,Zhejiang University,Hangzhou 311200,Zhejiang,China
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表12种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
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Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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