Our data suggested that targeting USP37 induces enzyme-dependent degradation of SND1, which inspired us to employ USP37 inhibitors to eradicate SND1 for CRC treatment. However, no small-molecule inhibitors of USP37 have been reported to date. Consequently, we conducted high-throughput virtual screening (HTVS) of 12 862 compounds to identify potential USP37 inhibitors (
Fig. 7A). Following successive SP and XP docking analyses, the top 20 compounds with the highest docking scores were selected for further validation. In an
in vitro deubiquitination assay using di-ubiquitin chains as substrates, we observed that USP37 cleaves K48-linked di-ubiquitin, and this cleavage was blocked to varying degrees by most of the 20 preselected compounds, with Dacarbazine exhibiting the strongest inhibition (Supporting Information Fig. S7A and S7B). Protein–ligand interaction fingerprint analysis indicated that Dacarbazine forms hydrogen bonds with Asp438, Asn503, and Asp504 of USP37 and salt bridges with Asp438 and Asp504 (
Fig. 7B). Indeed, we sought to determine whether Dacarbazine regulates SND1. Treatment with Dacarbazine downregulated SND1 levels in a dose-dependent manner in SW480 and HCT116 cells (Fig. S7C and S7D), without significantly altering SND1 mRNA levels (Fig. S7E). We further assessed the dependence of Dacarbazine-induced SND1 downregulation on USP37 and the ubiquitin-proteasome system. The proteasome inhibitor MG132 reversed the downregulation of SND1 by Dacarbazine (
Fig. 7C and Fig. S7F), suggesting that Dacarbazine promotes SND1 degradation
via the proteasome. Dacarbazine significantly enhanced SND1 ubiquitination (
Fig. 7D and Fig. S7G) and reduced its half-life (
Fig. 7E), recapitulating the effects of USP37 gene silencing. Importantly, in HCT116 cells transfected with control sgRNA, Dacarbazine downregulated the SND1, but not in homologous USP37 knockout HCT116 cells (
Fig. 7F and Fig. S7H), indicating that the compound destabilizes SND1 through USP37. Dacarbazine effectively inhibits the removal of K48-linked ubiquitin chains at K249 of SND1 (Fig. S7I and S7J). Furthermore, we conducted an
in vitro de-ubiquitination assay. As shown in
Fig. 7G, recombinant USP37 was pretreated with Dacarbazine and co-incubated with ubiquitinated SND1. The results indicated that Dacarbazine significantly disrupted the decline in SND1 ubiquitination induced by USP37, suggesting that the deubiquitinating activity of USP37 was inhibited by Dacarbazine in a concentration-dependent manner. We also evaluated whether Facarbazine effectively blocked the deubiquitinating activity of exogenous USP37, thereby triggering endogenous SND1 degradation. The results showed that Dacarbazine effectively increased the ubiquitination level of SND1 in HEK293T and DLD1 cells (
Fig. 7H and Fig. S7K). Treatment with Dacarbazine notably weakened USP37's maintenance of SND1 stability (Fig. S7L and S7M,
Fig. 7I). Subsequently, we investigated whether Dacarbazine could also exert sustained pharmacological inhibition of USP37
in vivo. The results revealed that the pharmacological inhibition of USP37 by Dacarbazine significantly reduced the proliferation and invasive metastasis of cancer cells (
Fig. 7J–M and Fig. S7N). However, no significant effect of Dacarbazine was observed in homologous USP37 knockout HCT116 cells (
Fig. 7N–Q and Fig. S7O). In summary, these data suggest that Dacarbazine holds promise as an effective USP37 inhibitor, inducing SND1 degradation by inhibiting USP37 deubiquitination.