During the Eocene-Oligocene climate transition, nannofossil assemblage study is an indispensable way to peer into the physiologic characteristics. A prolonged influence has caved in the structure of the coccolith, revealed by the decrease of the species with robust skeleton structure, suggesting that the Eocene/Oligocene event had a marked filter effect on Eocene nanoplanktons (
Aubry and Bord, 2009). Instead of nutrient limitation,
Henderiks and Pagani (2008) attribute the variation of coccolith size to CO
2 changes. The CO
2 decline makes it more difficult for larger cells to acquire enough CO
2 due to their relatively lower surface area/volume ratio. In order to acquire more carbon sources from the seawater, previous studies have suggested that coccolithophore might initiate CCM in the low CO
2 condition (
Bach et al., 2013;
Badger et al., 1998;
Bolton and Stoll, 2013;
Reinfelder, 2011;
Riebesell, 2004;
Rost et al., 2003). We tentatively adopt 19 μmol/L as the upper limit of CCM initiating threshold from culturing research (
Bolton and Stoll, 2013). With reconstructed Early Oligocene tropical Pacific sea surface temperature of ~25°C (
Liu et al., 2009), the estimated
p(CO
2) is around 650×10
–6 (volume fraction) (dashed horizontal line in
Fig. 6a). The CO
2 concentration reached to this value in the Early Oligocene (
Fig. 6). Comparing with our assemblage data, we suggest the changes in nannofossil were triggered by the carbonate chemistry condition in the ocean. With the continuous decrease in atmospheric CO
2 from the Eocene, weakened diffusive efficiency had caused a great limitation of carbon sources for coccolithophores. When CO
2 distinctly declined after 32 Ma, the
E* ratio changed synchronously with nutrient supply. This tendency can, to some degree, indicate that coccolithophore was more sensitive to CO
2 when the CCM has not progressed. When the
p(CO
2) declined to lower than ~650×10
–6 (volume fraction) since 32 Ma, the
E* ratio is more correlated with phosphorus. In this scenario, we infer that the CCM guarantees the carbon source for both calcification and photosynthesis, making nutrient the most limiting factor. Our results further imply that long-term coccolithophore species shifts as a result of oceanic changes will potentially have a more significant impact on carbon cycle feedbacks in the future, highlighting the importance of studying integrated community calcification.