The spatial distribution of the mesozooplankton community examined in this study reflects the existence of water mass exchange between the BOB and Andaman Sea. The mesozooplankton community similarity of some stations in the BOB and Andaman Sea exceeded 60% (e.g., between M7 and M15, and among M6, M12, M8, and M10;
Fig. 6), suggesting that the Preparis Channel was an important water passage transporting marine species between the BOB and Andaman Sea. Water mass exchange between the Andaman Sea and BOB goes through three major channels: the northern channel (Preparis Channel) with a shallow depth of approximately 250 m, the middle channel including passages from south of the Andaman Islands to north of the Nicobar Islands with a maximum depth of approximately 800 m, and the southern channel (Great Channel) with a maximum depth of approximately 1 800 m (
Chatterjee et al., 2017). The Preparis Channel is the channel with the largest net volume, with an annual mean transport value of 0.64×10
6 m
3/s (
Liao et al., 2020). Furthermore, transport in the Preparis Channel is relatively high in January and July, with net transport values of 1.36×10
6 m
3/s and 1.45×10
6 m
3/s, respectively, whereas in April and October, the water transport value is low and changes direction at 50 m depth (
Liao et al., 2020). Therefore, substantial water exchange did occur during the sampling period, resulting in the mixing of mesozooplankton communities between the BOB and the Andaman Sea. However, the mesozooplankton communities in the shallow water on the continental shelf off the Ayeyarwady Delta, Gulf of Mottama and Tanintharyi Coast (Group C) were relatively isolated, likely due to the blocking effect of the Martaban Canyon (
Fig. 1). The Martaban Canyon lies within a 120 km-wide bathymetric depression at the southern end of the Ayeyarwady Delta and Gulf of Mottama continental shelf (
Rao et al., 2005), which incises the continental shelf (
Ramaswamy et al., 2004), resulting in different oceanographic environments for the shelf and the deep Andaman Sea. The spatial patterns of zooplankton communities are linked to physical processes (ocean currents, eddies, jets, and diluted water), which affect zooplankton through effects on metabolic factors, primary productivity and predators (
Fernández-Álamo and Färber-Lorda, 2006). The VPA showed that the interaction of physical (depth, MLD, SST, SSS, CMT and CMS) and biological (SCHLA and CMCHLA) factors determined the spatial variation of the mesozooplankton community (accounting for 98.8%) in our study. RDA results showed that the influences of CMCHLA and CMT were the most significant, accounting for 43.1% and 12.6%, respectively, and followed by CMDO (12.7%) and CMS (6.6%). Therefore, the physical processes affected the mesozooplankton community mainly through effects on primary productivity in this area.