Article(id=1322631286322221602, tenantId=1146029695717560320, journalId=1302319053441957962, issueId=1322631259684192984, articleNumber=null, orderNo=null, doi=10.7501j.issn.0253-2670.2026.19.023, pmid=null, cstr=null, oa=null, hot=0, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=null, receivedDate=1776787200000, receivedDateStr=2026-04-22, revisedDate=null, revisedDateStr=null, acceptedDate=null, acceptedDateStr=null, onlineDate=1793269471959, onlineDateStr=2026-10-29, pubDate=null, pubDateStr=null, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1793269471959, onlineIssueDateStr=2026-10-29, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1793269471958, creator=13701087609, updateTime=1793269471958, updator=13701087609, issue=Issue{id=1322631259684192984, tenantId=1146029695717560320, journalId=1302319053441957962, year='2026', volume='57', issue='19', pageStart='7501', pageEnd='7928', issueExtLink='null', onlineDate='null', pubDate='1791734400000', pubDateStr='2026-10-12', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=1, specialIssue=null, createTime=1793269465608, creator='13701087609', updateTime=1793269554856, updator='13701087609', preIssue=null, nextIssue=null, articleTotal=null, ext={EN=IssueExt(id=1322631634101326494, tenantId=1146029695717560320, journalId=1302319053441957962, issueId=1322631259684192984, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1322631634101326495, tenantId=1146029695717560320, journalId=1302319053441957962, issueId=1322631259684192984, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null, downloadFileDto=null}, startPage=7799, endPage=7806, ext={EN=ArticleExt(id=1322631288046080548, articleId=1322631286322221602, tenantId=1146029695717560320, journalId=1302319053441957962, language=EN, title=Analysis of chloroplast genome and study of their specific DNA barcode in Bupleurum , columnId=null, journalTitle=Chinese Traditional and Herbal Drugs, columnName=null, runingTitle=null, highlight=null, articleAbstract=Objective To screen species and identify DNA molecular markers based on the chloroplast whole genome data of four species of the genus Bupleurum for medicinal use. Methods Based on the published chloroplast genome sequences of Bupleurum plants, the chloroplast genome was analyzed using bioinformatics methods. A specific DNA barcode for accurately identifying the four original species of Bupleurum medicinal materials was developed based on the hypervariable regions of the chloroplast genome, and then verified. Results The chloroplast genomes of four species ranged in size from 155 478—178 668 bp. All the four genomes were represented as typical quadripartite structures. Two pairs of primers based on the hypervariable regions were designed to efficiently amplify 55 samples. The analysis of sequencing results confirmed that two hypervariable regions, rps16-psbK and petN-psbM, can be used as specific DNA barcodes for the identification of Bupleurum chinense , B. scorzonerifolium , B. smithii and B. marginatum var. stenophyllum . Conclusion The specific DNA barcodes rps16-psbK and petN-psbM, screened by comparative chloroplast genomics, could achieve precise classification and identification of the four original species of Bupleurum medicinal materials, providing important scientific support for ensuring the safety of clinical use and regulating the market order of Bupleurum medicinal materials., authors=ZHANG Yu1 , WANG Ning1 , DONG Miaoya1 , BIAN Yongxin1 , XUE Meizhao1 , ZHAN Haixian1 , DU Chenhui1 , authorsList=ZHANG Yu, WANG Ning, DONG Miaoya, BIAN Yongxin, XUE Meizhao, ZHAN Haixian, DU Chenhui, authorCompany=1 School of Chinese Materia Medica and Food Engineering, Shanxi University of Chinese Medicine, Jinzhong 030619, China, correspAuthors=null, authorNote=null, correspAuthorsNote=null, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, fund=null), CN=ArticleExt(id=1322631287966388771, articleId=1322631286322221602, tenantId=1146029695717560320, journalId=1302319053441957962, language=CN, title=柴胡属叶绿体基因组分析及其特异DNA条形码研究, columnId=1304140203967410414, journalTitle=中草药, columnName=药材与资源, runingTitle=null, highlight=null, articleAbstract=目的 基于药用柴胡属4个物种的叶绿体全基因组数据筛选物种鉴定DNA分子标记。方法 基于已发表的柴胡属植物叶绿体基因组序列,利用生物信息学方法对其叶绿体基因组进行分析,并基于叶绿体基因组高变区开发精准鉴别柴胡药材4个基原物种的特异DNA条形码,最后进行验证。结果 4个物种叶绿体基因组大小在155 478~178 668 bp,呈典型四分体结构。基于高变区设计的2对引物均可对55份样品有效扩增,测序结果分析证明rps16-psbK和petN-psbM均可作为特异DNA条形码准确鉴定北柴胡Bupleurum chinense 、狭叶柴胡B. scorzonerifolium 、藏柴胡B. smithii 和黑柴胡B. marginatum var. stenophyllum 。结论 利用比较叶绿体基因组学筛选的特异DNA条形码rps16-psbK和petN-psbM可实现对柴胡药材4个基原物种的精准分类鉴定,为保障柴胡药材临床用药安全、规范柴胡药材市场秩序提供重要科学支撑。, authors=张瑜1 , 王宁1 , 董妙雅1 , 边永欣1 , 薛美昭1 , 詹海仙1 , 杜晨晖1 , authorsList=张瑜, 王宁, 董妙雅, 边永欣, 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Ran S Z, Peng R, Guo Q W, et al. Bupleurum in treatment of depression disorder: A comprehensive review [J]. Pharmaceuticals, 2024, 17(4): 512. Teng L L, Guo X W, Ma Y Z, et al. A comprehensive review on traditional and modern research of the genus Bupleurum (Bupleurum L., Apiaceae) in recent 10 years [J]. J Ethnopharmacol, 2023, 306: 116129. Tian Y, Guo J G, Jiang X Y, et al. Exploring the therapeutic potential of Bupleurum in medical treatment: A comprehensive overview [J]. Pharmaceuticals, 2025, 18(9): 1331. 马黎娟, 冯玛莉, 仝立国, 等. 藏柴胡药材化学成分及其药理作用研究综述[J]. 中国医药科学, 2023, 13(10): 54-57. 王惠, 冯玛莉, 张越, 等. 藏柴胡与北柴胡急性毒性、解热、抗炎作用的对比研究[J]. 世界科学技术—中医药现代化, 2020, 22(5): 1517-1523. 张韵洁, 李德铢. 叶绿体系统发育基因组学的研究进展[J]. 植物分类与资源学报, 2011, 33(4): 365-375. Hu J P, Yao J C, Lu J M, et al. The complete chloroplast genome sequences of nine melon varieties (Cucumis melo L.): Lights into comparative analysis and phylogenetic relationships [J]. Front Genet, 2024, 15: 1417266. Lee S R, Oh A, Son D C. Characterization, comparison, and phylogenetic analyses of chloroplast genomes of Euphorbia species [J]. Sci Rep, 2024, 14(1): 15352. Miao X R, Yang W W, Li D H, et al. Assembly and comparative analysis of the complete mitochondrial and chloroplast genome of Cyperus stoloniferus (Cyperaceae), a coastal plant possessing saline-alkali tolerance [J]. BMC Plant Biol, 2024, 24(1): 628. 范丙友, 陈盈, 郝明扬, 等. 芍药属4种药用植物叶绿体基因组比较及系统发育分析[J]. 中草药, 2025, 56(13): 4765-4778. 江雨欣, 王锐莹, 张旭, 等. 八角茴香及其混伪品的DNA分子标记鉴别[J]. 食品科技, 2022, 47(8): 307-311. 江转转, 陈红, 鲍红艳, 等. 狼尾草属叶绿体基因组特征与分子标记开发[J]. 浙江农林大学学报, 2025, 42(2): 365-372. 李志芳, 陈丽玲, 罗淑洁, 等. 西南牡蒿叶绿体基因组特征及系统发育分析[J]. 广西植物, 2024, 44(9): 1732-1745. 孟文娜, 浦香东, 蒲婧哲, 等. 败酱草及其近缘种叶绿体全基因组分析和DNA条形码构建[J]. 中国现代中药, 2024, 26(10): 1645-1653. 石旸, 胡力, 赵玉洋, 等. 地骨皮的多重位点特异性PCR鉴别[J]. 中国实验方剂学杂志, 2024, 30(4): 35-41. 张志飞, 赵中振, 王馨, 等. 刺五加特异性DNA条形码筛选、种质资源鉴定及遗传多样性分析[J]. 中国中药杂志, 2023, 48(5): 1229-1237. 陆亚茹, 彭晓祺, 吴文如, 等. 基于叶绿体基因组SNP鉴定不同化学型的广藿香[J]. 中药材, 2024, 47(9): 2192-2197. 田童心, 卢梦月, 王冬梅, 等. 贝母属植物叶绿体基因组研究进展[J]. 农业与技术, 2024, 44(24): 10-14. 王多梅, 蒲婧哲, 胡冲, 等. 利用DNA特征序列标记对伊犁贝母的快速鉴定[J]. 中草药, 2025, 56(15): 5563-5570. 李冉郡, 武立伟, 辛天怡, 等. 大黄药材基原物种叶绿体基因组分析与特异DNA条形码开发[J]. 药学学报, 2022, 57(5): 1495-1505. 赵俊禧, 姜霞, 石盼盼, 等. 基于叶绿体基因组序列筛选酸枣仁特异性引物的研究[J]. 中药材, 2025, 48(5): 1119-1122. 董博然, 赵志礼, 倪梁红, 等. 基于叶绿体基因组的长梗秦艽、全萼秦艽物种DNA分子标记与鉴定[J]. 药学学报, 2021, 56(9): 2584-2591. 王馨, 尹光耀, 张志飞, 等. 北柴胡特异DNA条形码筛选及种质资源鉴定[J]. 中草药, 2023, 54(17): 5703-5715. Shi L C, Chen H M, Jiang M, et al. CPGAVAS2, an integrated plastome sequence annotator and analyzer [J]. Nucleic Acids Res, 2019, 47(W1): W65-W73. Frazer K A, Pachter L, Poliakov A, et al. VISTA: Computational tools for comparative genomics [J]. Nucleic Acids Res, 2004, 32(Web Server issue): W273-W279. Rozas J, Ferrer-Mata A, Sánchez-DelBarrio J C, et al. DnaSP 6: DNA sequence polymorphism analysis of large data sets [J]. Mol Biol Evol, 2017, 34(12): 3299-3302. Kumar S, Stecher G, Suleski M, et al. MEGA12: Molecular evolutionary genetic analysis version 12 for adaptive and green computing [J]. Mol Biol Evol, 2024, 41(12): msae263. 张宏伟, 郑双佳, 晁志. 三种西北产柴胡的性状和显微鉴别[J]. 中药材, 2021, 44(9): 2074-2078. 周珊, 张蕊菊, 何春雨, 等. 柴胡分子鉴定及皂苷合成与调节研究进展[J]. 中药材, 2026, (4):1082-1086. 晁志. 柴胡属药用植物DNA条形码研究[A] //第十一届全国青年药学工作者最新科研成果交流会论文集[C]. 杭州: 中国药学会, 2012: 8. 曾伟萍. 柴胡属药用植物的条形码研究[D]. 广州: 南方医科大学, 2016. 张瑜, 王宁, 董妙雅, 等. 基于ITS2序列SNP位点的北柴胡及其近缘种种子鉴别[J]. 种子, 2026, 45(4): 176-181.)
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2026
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柴胡属叶绿体基因组分析及其特异DNA条形码研究
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张瑜, 王宁, 董妙雅, 边永欣, 薛美昭, 詹海仙, 杜晨晖
作者信息
作者简介:
张瑜: 张瑜(1982—),副教授,主要从事分子生药学研究。E-mail:zhangyu@sxtcm.edu.cn
Analysis of chloroplast genome and study of their specific DNA barcode in Bupleurum
ZHANG Yu, WANG Ning, DONG Miaoya, BIAN Yongxin, XUE Meizhao, ZHAN Haixian, DU Chenhui
Affiliations
1 School of Chinese Materia Medica and Food Engineering, Shanxi University of Chinese Medicine, Jinzhong 030619, China
doi: 10.7501j.issn.0253-2670.2026.19.023
文章导航
目的 基于药用柴胡属4个物种的叶绿体全基因组数据筛选物种鉴定DNA分子标记。方法 基于已发表的柴胡属植物叶绿体基因组序列,利用生物信息学方法对其叶绿体基因组进行分析,并基于叶绿体基因组高变区开发精准鉴别柴胡药材4个基原物种的特异DNA条形码,最后进行验证。结果 4个物种叶绿体基因组大小在155 478~178 668 bp,呈典型四分体结构。基于高变区设计的2对引物均可对55份样品有效扩增,测序结果分析证明rps16-psbK和petN-psbM均可作为特异DNA条形码准确鉴定北柴胡Bupleurum chinense 、狭叶柴胡B. scorzonerifolium 、藏柴胡B. smithii 和黑柴胡B. marginatum var. stenophyllum 。结论 利用比较叶绿体基因组学筛选的特异DNA条形码rps16-psbK和petN-psbM可实现对柴胡药材4个基原物种的精准分类鉴定,为保障柴胡药材临床用药安全、规范柴胡药材市场秩序提供重要科学支撑。
柴胡
/
柴胡属
/
叶绿体基因组
/
基原鉴定
/
特异DNA条形码
Objective To screen species and identify DNA molecular markers based on the chloroplast whole genome data of four species of the genus Bupleurum for medicinal use. Methods Based on the published chloroplast genome sequences of Bupleurum plants, the chloroplast genome was analyzed using bioinformatics methods. A specific DNA barcode for accurately identifying the four original species of Bupleurum medicinal materials was developed based on the hypervariable regions of the chloroplast genome, and then verified. Results The chloroplast genomes of four species ranged in size from 155 478—178 668 bp. All the four genomes were represented as typical quadripartite structures. Two pairs of primers based on the hypervariable regions were designed to efficiently amplify 55 samples. The analysis of sequencing results confirmed that two hypervariable regions, rps16-psbK and petN-psbM, can be used as specific DNA barcodes for the identification of Bupleurum chinense , B. scorzonerifolium , B. smithii and B. marginatum var. stenophyllum . Conclusion The specific DNA barcodes rps16-psbK and petN-psbM, screened by comparative chloroplast genomics, could achieve precise classification and identification of the four original species of Bupleurum medicinal materials, providing important scientific support for ensuring the safety of clinical use and regulating the market order of Bupleurum medicinal materials.
Bupleuri Radix
/
Bupleurum L.
/
chloroplast genome
/
original species identification
/
specific DNA barcode
张瑜, 王宁, 董妙雅, 边永欣, 薛美昭, 詹海仙, 杜晨晖.
柴胡属叶绿体基因组分析及其特异DNA条形码研究.
中草药,
2026
, 57
(19)
: 7799
-7806
.
DOI: 10.7501j.issn.0253-2670.2026.19.023
ZHANG Yu, WANG Ning, DONG Miaoya, BIAN Yongxin, XUE Meizhao, ZHAN Haixian, DU Chenhui.
Analysis of chloroplast genome and study of their specific DNA barcode in Bupleurum [J].
Chinese Traditional and Herbal Drugs ,
2026
, 57
(19)
: 7799
-7806
.
DOI: 10.7501j.issn.0253-2670.2026.19.023
山西省科学技术厅山西省科技创新人才团队项目 (202304051001020); 山西省中医药重点研究室建设项目 (zyyyjs2024024); 山西省中医药管理局中医药创新团队项目 (zyytd2024026); 山西中医药大学科技创新团队项目 (2022TD2009); 山西中医药大学科技创新能力培育计划 (2024PY-JL-10-01); 山西中医药大学博士科研启动资金 (2023BK41); 2025年度中医药产业发展现代化支撑项目 (2025zyycy02)
参考文献
引证文献
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2种不同金属材料的力学参数
科 Family 属数 Number of genus 种数 Number of species 占总种数比例 Percentage of total species (%) 属 Genus 种数 Number of species 占总种数比例 Percentage of total species (%) 鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78 小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39 多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39 红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87 小菇属 Mycena 11 5.26 光柄菇属 Pluteus 5 2.39 红菇属 Russula 17 8.13 栓菌属 Trametes 5 2.39
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