Article(id=1319981777058378737, tenantId=1146029695717560320, journalId=1302319053441957962, issueId=1319981498787279574, articleNumber=PA20260909_MyxljxX2, orderNo=null, doi=10.7501/j.issn.0253-2670.2026.16.023, pmid=null, cstr=null, oa=null, hot=0, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=null, receivedDate=1769961600000, receivedDateStr=2026-02-02, revisedDate=null, revisedDateStr=null, acceptedDate=null, acceptedDateStr=null, onlineDate=1792637779726, onlineDateStr=2026-10-22, pubDate=1787846400000, pubDateStr=2026-08-28, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1792637779726, onlineIssueDateStr=2026-10-22, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1792637779726, creator=admin, updateTime=1792637779726, updator=admin, issue=Issue{id=1319981498787279574, tenantId=1146029695717560320, journalId=1302319053441957962, year='2026', volume='57', issue='16', pageStart='6209', pageEnd='6660', issueExtLink='null', onlineDate='null', pubDate='1787846400000', pubDateStr='2026-08-28', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=-1, specialIssue=null, createTime=1792637713380, creator='ztmeta', updateTime=1792637713380, updator='ztmeta', preIssue=null, nextIssue=null, articleTotal=null, ext=null, issueFiles=null, downloadFileDto=null}, startPage=6510, endPage=6520, ext={EN=ArticleExt(id=1319981779709178867, articleId=1319981777058378737, tenantId=1146029695717560320, journalId=1302319053441957962, language=EN, title=Diversity analysis and functional prediction of endophytic bacteria in different tissues of Duchesnea indica based on Illumina high-throughput sequencing, columnId=null, journalTitle=Chinese Traditional and Herbal Drugs, columnName=null, runingTitle=null, highlight=null, articleAbstract=Objective To analyze the diversity and functional potential of endophytic bacterial communities in different tissues of Duchesnea indica and explore their potential relationship with the medicinal activity of the host plant. Methods Endophytic bacteria from the root, stem, leaf and fruit tissues of D. indica were studied. DNA fragments of the microbial communities were subjected to paired-end sequencing using Illumina high-throughput technology. Sequences were processed using DADA2 and Vsearch, followed by bioinformatics analysis and functional potential prediction. Results High-throughput sequencing of the endophytic bacterial genomes yielded a total of 1 914 360 raw sequences. At the phylum level, Proteobacteria was the dominant group. Among different tissues, the stem exhibited the highest richness of endophytic bacteria, while the root showed the highest diversity. Sphingomonas was identified as a key biomarker distinguishing intergroup differences and showed a significant positive correlation with Pseudomonas . Both bacterial genuses were major contributors to the N 10 -formyltetrahydrofolate biosynthesis pathway. Conclusion The endophytic bacterial communities in the leaf, fruit and stem tissues of D. indica exhibited high similarity but were significantly distinct from those in the root. Pseudomonas and Sphingomonas may play synergistic roles in the synthesis of secondary metabolites or in enhancing host stress resistance., authors=ZHANG Hui1 , LI Guiwen1,2 , YANG Shengli2 , ZHU Lina1 , WANG Jingyu1 , XIAO Gongnian1 , authorsList=ZHANG Hui, LI Guiwen, YANG Shengli, ZHU Lina, WANG Jingyu, XIAO Gongnian, authorCompany=1 School of Biological and Chemical Engineering, Zhejiang University of Science and Technology, Hangzhou 310023, China; 2 College of Pharmaceutical Science, Zhejiang University of Technology, Hangzhou 310014, China, correspAuthors=null, authorNote=null, correspAuthorsNote=null, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, fund=null), CN=ArticleExt(id=1319981779625292786, articleId=1319981777058378737, tenantId=1146029695717560320, journalId=1302319053441957962, language=CN, title=基于Illumina高通量测序的蛇莓不同组织内生细菌多样性分析与功能预测, columnId=1304140203967410414, journalTitle=中草药, columnName=药材与资源, runingTitle=null, highlight=null, articleAbstract=目的 剖析蛇莓Duchesnea indica 不同组织内生细菌群落的多样性及其功能,揭示内生细菌与蛇莓药用活性间的潜在联系。方法 以蛇莓组织根、茎、叶、果中内生细菌为研究对象,运用Illumina高通量技术对群落DNA片段进行双端测序,借助DADA2和Vsearch方法处理序列,进行生物信息学分析及功能潜能预测。结果 蛇莓内生细菌基因组经高通量测序,共获取1 914 360条原始序列,在“门”水平上,以变形菌门(Proteobacteria)为优势菌群。不同组织中内生细菌以茎内丰富度最高,根内多样性最高。鞘氨醇单胞菌属Sphingomonas 是区分组间差异的关键标志物种,与假单胞菌属Pseudomonas 呈显著正相关,且二者是N ₁₀-甲酰基四氢叶酸生物合成代谢通路的主要构成菌属。结论 蛇莓内生细菌群落在叶、果实与茎中相似性较高,与根差异明显;假单胞菌属与鞘氨醇单胞菌可能在次生代谢产物合成或宿主抗逆性增强中发挥协同作用。, authors=张慧1 , 李贵文1,2 , 杨胜利2 , 朱李娜1 , 王靖宇1 , 肖功年1 , authorsList=张慧, 李贵文, 杨胜利, 朱李娜, 王靖宇, 肖功年, authorCompany=1 浙江科技大学生物与化学工程学院, 浙江 杭州 310023; 2 浙江工业大学药学院, 浙江 杭州 310014, correspAuthors=null, authorNote=张慧: 张慧(1972—),女,教授级高级工程师,硕士生导师,主要从事功能食品研究。E-mail:zhanghui0461@zust.edu.cn, correspAuthorsNote=null, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=https://oss.bj-dx-dzqywjd-hlw-icp.inspurcloudoss.com:6063/cast-journal-prod/2097521198041731073/excel/pdfs/51231983771e4661a9ffbbf5d69d230c.pdf?response-content-disposition=attachment%3B%20filename%3D%2220261623.pdf%22&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20261022T025344Z&X-Amz-SignedHeaders=host&X-Amz-Expires=604800&X-Amz-Credential=NjRlNmUzOGMtM2Y3OC00MDQ3LThkMmYtN2JkODRmYmI3MTgw%2F20261022%2Fbj-dx-dzqywjd-hlw-icp%2Fs3%2Faws4_request&X-Amz-Signature=eca959567bc3acc5d560fc44c1863aa96289fbed8b2ca5c23a9d65a5bb18f202, pdf=U7JlXyOUec1eU+HjIebhOQ==, pdfFileSize=1506933, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, fund=浙江省尖兵领雁研发攻关计划项目 (2023C02042))}, 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310023浙江科技大学生物与化学工程学院, 浙江 杭州 310023, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1319981779822425076, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, xref=1, ext=[AuthorCompanyExt(id=1319981779830813685, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, companyId=1319981779822425076, language=CN, country=null, province=null, city=null, postcode=null, companyName=浙江科技大学生物与化学工程学院, 浙江 杭州 310023, departmentName=null, remark=1. 浙江科技大学生物与化学工程学院, 浙江 杭州 310023)])])], keywords=[Keyword(id=1322633181711414162, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, language=CN, orderNo=1, keyword=蛇莓), Keyword(id=1322633181795300243, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, language=CN, orderNo=2, keyword=内生细菌), Keyword(id=1322633181870797716, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, language=CN, orderNo=3, keyword=高通量测序), Keyword(id=1322633181954683797, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, language=CN, orderNo=4, keyword=多样性), Keyword(id=1322633182067930006, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, language=CN, orderNo=5, keyword=群落结构), Keyword(id=1322633182202147735, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, language=EN, orderNo=1, keyword=Duchesnea indica (Andr.) Focke), Keyword(id=1322633182298616728, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, language=EN, orderNo=2, keyword=endophytic bacteria), Keyword(id=1322633182491554713, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, language=EN, orderNo=3, keyword=high-throughput sequencing), Keyword(id=1322633182596412314, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, language=EN, orderNo=4, keyword=diversity), Keyword(id=1322633182902596507, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, language=EN, orderNo=5, keyword=community structure)], refs=[Reference(id=1319981783991562262, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1319981777058378737, doi=null, pmid=null, pmcid=null, year=null, volume=null, issue=null, pageStart=null, pageEnd=null, url=null, language=null, rfNumber=1, rfOrder=0, authorNames=null, journalName=null, refType=null, unstructuredReference=Chen T, Chen M, Zhu R, et al . 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中草药
|药材与资源
2026
, 57
(16) :
6510
-6520
基于Illumina高通量测序的蛇莓不同组织内生细菌多样性分析与功能预测
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张慧 1 , 李贵文 1 ,2 , 杨胜利 2 , 朱李娜 1 , 王靖宇 1 , 肖功年 1
作者信息
1. 浙江科技大学生物与化学工程学院, 浙江 杭州 310023
2. 浙江工业大学药学院, 浙江 杭州 310014
作者简介:
张慧: 张慧(1972—),女,教授级高级工程师,硕士生导师,主要从事功能食品研究。E-mail:zhanghui0461@zust.edu.cn
Diversity analysis and functional prediction of endophytic bacteria in different tissues of Duchesnea indica based on Illumina high-throughput sequencing
Affiliations
出版时间: 2026-08-28
doi: 10.7501/j.issn.0253-2670.2026.16.023
文章导航
目的 剖析蛇莓Duchesnea indica 不同组织内生细菌群落的多样性及其功能,揭示内生细菌与蛇莓药用活性间的潜在联系。方法 以蛇莓组织根、茎、叶、果中内生细菌为研究对象,运用Illumina高通量技术对群落DNA片段进行双端测序,借助DADA2和Vsearch方法处理序列,进行生物信息学分析及功能潜能预测。结果 蛇莓内生细菌基因组经高通量测序,共获取1 914 360条原始序列,在“门”水平上,以变形菌门(Proteobacteria)为优势菌群。不同组织中内生细菌以茎内丰富度最高,根内多样性最高。鞘氨醇单胞菌属Sphingomonas 是区分组间差异的关键标志物种,与假单胞菌属Pseudomonas 呈显著正相关,且二者是N ₁₀-甲酰基四氢叶酸生物合成代谢通路的主要构成菌属。结论 蛇莓内生细菌群落在叶、果实与茎中相似性较高,与根差异明显;假单胞菌属与鞘氨醇单胞菌可能在次生代谢产物合成或宿主抗逆性增强中发挥协同作用。
蛇莓
/
内生细菌
/
高通量测序
/
多样性
/
群落结构
Objective To analyze the diversity and functional potential of endophytic bacterial communities in different tissues of Duchesnea indica and explore their potential relationship with the medicinal activity of the host plant. Methods Endophytic bacteria from the root, stem, leaf and fruit tissues of D. indica were studied. DNA fragments of the microbial communities were subjected to paired-end sequencing using Illumina high-throughput technology. Sequences were processed using DADA2 and Vsearch, followed by bioinformatics analysis and functional potential prediction. Results High-throughput sequencing of the endophytic bacterial genomes yielded a total of 1 914 360 raw sequences. At the phylum level, Proteobacteria was the dominant group. Among different tissues, the stem exhibited the highest richness of endophytic bacteria, while the root showed the highest diversity. Sphingomonas was identified as a key biomarker distinguishing intergroup differences and showed a significant positive correlation with Pseudomonas . Both bacterial genuses were major contributors to the N 10 -formyltetrahydrofolate biosynthesis pathway. Conclusion The endophytic bacterial communities in the leaf, fruit and stem tissues of D. indica exhibited high similarity but were significantly distinct from those in the root. Pseudomonas and Sphingomonas may play synergistic roles in the synthesis of secondary metabolites or in enhancing host stress resistance.
Duchesnea indica (Andr.) Focke
/
endophytic bacteria
/
high-throughput sequencing
/
diversity
/
community structure
张慧, 李贵文, 杨胜利, 朱李娜, 王靖宇, 肖功年.
基于Illumina高通量测序的蛇莓不同组织内生细菌多样性分析与功能预测.
中草药,
2026
, 57
(16)
: 6510
-6520
.
DOI: 10.7501/j.issn.0253-2670.2026.16.023
ZHANG Hui, LI Guiwen, YANG Shengli, ZHU Lina, WANG Jingyu, XIAO Gongnian.
Diversity analysis and functional prediction of endophytic bacteria in different tissues of Duchesnea indica based on Illumina high-throughput sequencing[J].
Chinese Traditional and Herbal Drugs ,
2026
, 57
(16)
: 6510
-6520
.
DOI: 10.7501/j.issn.0253-2670.2026.16.023
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2026年第57卷第16期
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doi: 10.7501/j.issn.0253-2670.2026.16.023
接收时间:2026-02-02
首发时间:2026-10-22
出版时间:2026-08-28
1. 浙江科技大学生物与化学工程学院, 浙江 杭州 310023
2. 浙江工业大学药学院, 浙江 杭州 310014
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2种不同金属材料的力学参数
科 Family 属数 Number of genus 种数 Number of species 占总种数比例 Percentage of total species (%) 属 Genus 种数 Number of species 占总种数比例 Percentage of total species (%) 鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78 小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39 多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39 红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87 小菇属 Mycena 11 5.26 光柄菇属 Pluteus 5 2.39 红菇属 Russula 17 8.13 栓菌属 Trametes 5 2.39
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