Article(id=1304406874351227709, tenantId=1146029695717560320, journalId=1302319053441957962, issueId=1304406828071281069, articleNumber=null, orderNo=null, doi=10.7501/j.issn.0253-2670.2026.02.021, pmid=null, cstr=null, oa=null, hot=0, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=null, receivedDate=1757001600000, receivedDateStr=2025-09-05, revisedDate=null, revisedDateStr=null, acceptedDate=null, acceptedDateStr=null, onlineDate=1788924433553, onlineDateStr=2026-09-09, pubDate=null, pubDateStr=null, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1788924433553, onlineIssueDateStr=2026-09-09, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1788924433553, creator=13701087609, updateTime=1788924433553, updator=13701087609, issue=Issue{id=1304406828071281069, tenantId=1146029695717560320, journalId=1302319053441957962, year='2026', volume='57', issue='2', pageStart='393', pageEnd='788', issueExtLink='null', onlineDate='null', pubDate='1769529600000', pubDateStr='2026-01-28', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=-1, specialIssue=null, createTime=1788924422518, creator='13701087609', updateTime=1788924652596, updator='13701087609', preIssue=null, nextIssue=null, articleTotal=null, ext={EN=IssueExt(id=1304407793138688830, tenantId=1146029695717560320, journalId=1302319053441957962, issueId=1304406828071281069, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1304407793138688831, tenantId=1146029695717560320, journalId=1302319053441957962, issueId=1304406828071281069, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null, downloadFileDto=null}, startPage=618, endPage=626, ext={EN=ArticleExt(id=1304406874758075199, articleId=1304406874351227709, tenantId=1146029695717560320, journalId=1302319053441957962, language=EN, title=Genome-wide identification and expression pattern analysis of TIFY gene family in Gastrodia elata f. glauca, columnId=null, journalTitle=Chinese Traditional and Herbal Drugs, columnName=null, runingTitle=null, highlight=null, articleAbstract=ObjectiveTo systematically analyze the TIFY gene family members in Gastrodia elata f. glauca and explore their potential molecular mechanisms in the interaction between G. elata. f. glauca and Armillaria gallica. Methods Based on the whole-genome data of G. elata f. glauca, bioinformatics methods were used to analyze the system evolution, gene structures, and chromosome distribution. The gene expression characteristicswere detected by qRT-PCR, and the jasmonic acid (JA) content was detected by mass spectrometry. The correlation between gene expression and JA content was further analyzed. Results A total of 30 TIFY family members were identified in G. elata f. glauca, belonging to four subfamilies: TIFY, JAZ, PPD, and ZML. They have highly conserved protein motifs and similar exon/intron structures, and are unevenly distributed on seven chromosomes. The number of conserved homologous genes in G. elata f. glauca is more than that in Arabidopsis thaliana, indicating a specific expansion of the TIFY family. The cis-acting element analysis revealed that the promoter regions of the TIFY family members in G. elata f. glauca are enriched with a large number of hormone response, stress response, and growth and development-related elements. Transcriptome analysis showed that A. gallica infection induced differential expression of 19 TIFY family members in G. elata f. glauca. In the mother tubers, GeJAZ4-3, GeJAZ8, and GeJAZ1-1 were significantly upregulated, and the expression levels of multiple members were significantly positively correlated with JA content, especially the expression level of GeJAZ4-3. Conclusion The TIFY gene family in G. elata f. glauca shows specific expansion. GeJAZ4-3, as a key regulatory factor, mediates the JA signaling pathway to regulate the balance of the interaction between G. elata f. glauca and A. gallica, laying an important foundation for the analysis of the symbiotic mechanism of G. elata and facilitating disease-resistant breeding., authors=WANG Xiuwen, RAN Dandan, OU Xiaohong, YUAN Qingsong, ZHOU Tao, JIANG Weike, XU Jiao, authorsList=WANG Xiuwen, RAN Dandan, OU Xiaohong, YUAN Qingsong, ZHOU Tao, JIANG Weike, XU Jiao, authorCompany=null, correspAuthors=null, authorNote=null, correspAuthorsNote=null, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, fund=null), CN=ArticleExt(id=1304406874577720126, articleId=1304406874351227709, tenantId=1146029695717560320, journalId=1302319053441957962, language=CN, title=乌天麻TIFY基因家族的全基因组鉴定及表达模式分析, columnId=1304140203967410414, journalTitle=中草药, columnName=药材与资源, runingTitle=null, highlight=null, articleAbstract=目的 系统解析乌天麻Gastrodia elata f.glauca TIFY基因家族成员,并探究其在乌天麻-蜜环菌Armillaria gallica互作过程中的潜在分子机制。方法 基于乌天麻全基因组数据,结合生物信息学方法系统分析其系统进化、基因结构及染色体分布,通过qRT-PCR检测基因表达特征,利用质谱检测茉莉酸(jasmonic acid,JA)含量,分析基因表达与JA含量的相关性。结果 共鉴定到30个乌天麻TIFY家族成员,分属TIFY、JAZ、PPD与ZML 4个亚家族,具有高度保守的蛋白基序和相似的外显子/内含子结构,不均匀分布于7条染色体上,与石斛Dendrobium nobile的保守同源基因对多于拟南芥Arabidopsis thaliana,存在特异性扩张。顺式作用元件分析发现,乌天麻TIFY家族成员启动子区富集大量激素响应、胁迫响应及生长发育相关元件。转录组分析表明,蜜环菌侵染诱导乌天麻19个TIFY家族成员差异表达,母麻中GeJAZ4-3GeJAZ8GeJAZ1-1显著上调表达,且多个成员表达量与JA含量呈显著正相关,尤以GeJAZ4-3表达量变化最为显著。结论 乌天麻TIFY基因家族呈现特异性扩张,GeJAZ4-3作为关键调控因子,通过介导JA信号通路调控乌天麻-蜜环菌互作平衡,为天麻共生机制解析及抗病育种奠定重要基础。, authors=王秀雯1, 冉丹丹1, 欧小宏1,2, 袁青松1,2,3, 周涛1,2, 江维克1,2, 徐娇1,2, authorsList=王秀雯, 冉丹丹, 欧小宏, 袁青松, 周涛, 江维克, 徐娇, authorCompany=1 贵州中医药大学 中药民族药资源研究院, 贵州 贵阳 550025;
2 贵州省道地药材种质创新与资源高效利用全省重点实验室, 贵州 贵阳 550025;
3 道地药材品质保障与资源持续利用全国重点实验室, 北京 100700, correspAuthors=徐娇, authorNote=王秀雯: 王秀雯(2000—),女,云南镇雄人,在读硕士研究生,主要从事中药材分子生理研究。E-mail: 2973986109@qq.com, correspAuthorsNote=null, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=sMADIRzQqkqJxO8UiHawyQ==, pdfFileSize=1979154, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, fund=国家重点研发计划 (2023YFC3503803); 中央本级重大增减支项目 (2060302))}, authors=null, keywords=[Keyword(id=1304406874883904320, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1304406874351227709, language=CN, orderNo=1, keyword=天麻), Keyword(id=1304406874959401793, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1304406874351227709, language=CN, orderNo=2, keyword=乌天麻), Keyword(id=1304406875030704962, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1304406874351227709, language=CN, orderNo=3, keyword=TIFY基因家族), Keyword(id=1304406875093619523, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1304406874351227709, language=CN, orderNo=4, keyword=生物信息学), Keyword(id=1304406875156534084, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1304406874351227709, language=CN, orderNo=5, keyword=茉莉酸), Keyword(id=1304406875244614469, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1304406874351227709, language=CN, orderNo=6, keyword=表达模式), Keyword(id=1304406875366249286, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1304406874351227709, language=EN, orderNo=1, keyword=Gastrodia elata Bl.), Keyword(id=1304406875433358151, tenantId=1146029695717560320, journalId=1302319053441957962, articleId=1304406874351227709, language=EN, orderNo=2, keyword=Gastrodia elata Bl. f. glauca S. 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王燕华. 长白山乌杆天麻病害防御相关基因的发掘与功能分析[D]. 长春:吉林农业大学, 2021.
祁稼民, 许春苗, 肖斌. 马铃薯TIFY基因家族的全基因组鉴定及表达分析[J]. 作物学报, 2024, 50(9):2297-2309.
Chen C J, Chen H, Zhang Y, et al. TBtools:An integrative toolkit developed for interactive analyses of big biological data[J]. Mol Plant, 2020, 13(8):1194-1202.
Bailey T L, Johnson J, Grant C E, et al. The MEME suite[J]. Nucleic Acids Res, 2015, 43(w1):W39-W49.
Tamura K, Stecher G, Kumar S. MEGA11:Molecular evolutionary genetics analysis version 11[J]. Mol Biol Evol, 2021, 38(7):3022-3027.
于相丽, 刘雅银, 李勇慧, 等. 金钗石斛AP2/ERF基因家族的鉴定和表达分析[J]. 江苏农业科学, 2024, 52(17):47-57.
Lescot M, Déhais P, Thijs G, et al. PlantCARE, a database of plant Cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences[J]. Nucleic Acids Res, 2002, 30(1):325-327.
Xu J, Hu Z P, He H, et al. Transcriptome analysis reveals that jasmonic acid biosynthesis and signaling is associated with the biosynthesis of asperosaponin VI in Dipsacus asperoides[J]. Front Plant Sci, 2022, 13:1022075.
Liu H B, Li X H, Xiao J H, et al. A convenient method for simultaneous quantification of multiple phytohormones and metabolites:Application in study of rice-bacterium interaction[J]. Plant Methods, 2012, 8(1):2.
Makowski D, Ben-Shachar M, Patil I, et al. Methods and algorithms for correlation analysis in R[J]. J Open Source Softw, 2020, 5(51):2306.
Liu X, Zhao C B, Yang L M, et al. Genome-wide identification, expression profile of the TIFY gene family in Brassica oleracea var. capitata, and their divergent response to various pathogen infections and phytohormone treatments[J]. Genes, 2020, 11(2):127.
Li S J, Xu B L, Niu X L, et al. JAZ8 interacts with VirE3 attenuating Agrobacterium mediated root tumorigenesis[J]. Front Plant Sci, 2021, 12:685533.
Aerts N, Pereira Mendes M, Van Wees S C M. Multiple levels of crosstalk in hormone networks regulating plant defense[J]. Plant J, 2021, 105(2):489-504.
练从龙, 兰金旭, 杨晶凡, 等. 基于冬凌草全长转录组的TIFY基因家族鉴定与表达分析[J]. 福建农业学报, 2024, 39(3):290-301.
Tao J J, Jia H M, Wu M T, et al. Genome-wide identification and characterization of the TIFY gene family in kiwifruit[J]. BMC Genomics, 2022, 23(1):179.
刘同金, 刘振洋, 班秋妍, 等. 丝瓜TIFY基因克隆及组织表达分析[J]. 西北植物学报, 2024, 44(11):1752-1759.
Chen Q, Dai R, Shuang S, et al. Genome-wide investigation of the TIFY transcription factors in alfalfa (Medicago sativa L.):Identification, analysis, and expression[J]. BMC Plant Biol, 2024, 24(1):840.
Chen L G, Zhang L P, Xiang S Y, et al. The transcription factor WRKY75 positively regulates jasmonate-mediated plant defense to necrotrophic fungal pathogens[J]. J Exp Bot, 2021, 72(4):1473-1489.
唐鑫, 张进强, 江维克, 等. 天麻褐腐病病原菌的分离鉴定及致病性研究[J]. 中国中药杂志, 2022, 47(9):2288-2295.
Bai Y H, Meng Y J, Huang D L, et al. Origin and evolutionary analysis of the plant-specific TIFY transcription factor family[J]. Genomics, 2011, 98(2):128-136.
Andrade Galan A G, Doll J, Saile S C, et al. The non-jaz tify protein tify8 of Arabidopsis thaliana interacts with the hd-zip iii transcription factor revoluta and regulates leaf senescence[J]. Int J Mol Sci, 2023, 24(4):3079.
胡睿, 郭建秀, 郭小强, 等. 铁皮石斛DoTIFY基因家族全基因组鉴定及在原球茎发育过程中的表达[J]. 生物学杂志, 2021, 38(5):53-58.
Lambert M J, Cochran W O, Wilde B M, et al. Evidence for widespread subfunctionalization of splice forms in vertebrate genomes[J]. Genome Res, 2015, 25(5):624-632.
Yuan Y, Jin X H, Liu J, et al. The Gastrodia elata genome provides insights into plant adaptation to heterotrophy[J]. Nat Commun, 2018, 9(1):1615.
Dai Z N, Dong S Y, Miao H, et al. Genome-wide identification of TIFY genes and their response to various pathogen infections in cucumber (Cucumis sativus L.)[J]. Sci Hortic, 2022, 295:110814.
李娜, 宋治华, 范雨欣, 等. 木豆JAZ基因家族鉴定及其响应致病真菌Cc1-1侵染的表达分析[J]. 农业生物技术学报, 2021, 29(8):1495-1505.
程世亚, 袁澍, 席德慧, 等. 植物系统获得性抗性的分子机理[J]. 生命的化学, 2008, 28(3):256-259.)
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中草药 | 药材与资源 2026,57(2): 618-626
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中草药 |药材与资源 2026 , 57 (2) : 618 -626
乌天麻TIFY基因家族的全基因组鉴定及表达模式分析
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王秀雯1, 冉丹丹1, 欧小宏1,2, 袁青松1,2,3, 周涛1,2, 江维克1,2, 徐娇1,2
作者信息
    1 贵州中医药大学 中药民族药资源研究院, 贵州 贵阳 550025;
    2 贵州省道地药材种质创新与资源高效利用全省重点实验室, 贵州 贵阳 550025;
    3 道地药材品质保障与资源持续利用全国重点实验室, 北京 100700
通讯作者:
徐娇
作者简介:
王秀雯: 王秀雯(2000—),女,云南镇雄人,在读硕士研究生,主要从事中药材分子生理研究。E-mail: 2973986109@qq.com
Genome-wide identification and expression pattern analysis of TIFY gene family in Gastrodia elata f. glauca
  • WANG Xiuwen, RAN Dandan, OU Xiaohong, YUAN Qingsong, ZHOU Tao, JIANG Weike, XU Jiao
  • Affiliations
    doi: 10.7501/j.issn.0253-2670.2026.02.021
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    目的 系统解析乌天麻Gastrodia elata f.glauca TIFY基因家族成员,并探究其在乌天麻-蜜环菌Armillaria gallica互作过程中的潜在分子机制。方法 基于乌天麻全基因组数据,结合生物信息学方法系统分析其系统进化、基因结构及染色体分布,通过qRT-PCR检测基因表达特征,利用质谱检测茉莉酸(jasmonic acid,JA)含量,分析基因表达与JA含量的相关性。结果 共鉴定到30个乌天麻TIFY家族成员,分属TIFY、JAZ、PPD与ZML 4个亚家族,具有高度保守的蛋白基序和相似的外显子/内含子结构,不均匀分布于7条染色体上,与石斛Dendrobium nobile的保守同源基因对多于拟南芥Arabidopsis thaliana,存在特异性扩张。顺式作用元件分析发现,乌天麻TIFY家族成员启动子区富集大量激素响应、胁迫响应及生长发育相关元件。转录组分析表明,蜜环菌侵染诱导乌天麻19个TIFY家族成员差异表达,母麻中GeJAZ4-3GeJAZ8GeJAZ1-1显著上调表达,且多个成员表达量与JA含量呈显著正相关,尤以GeJAZ4-3表达量变化最为显著。结论 乌天麻TIFY基因家族呈现特异性扩张,GeJAZ4-3作为关键调控因子,通过介导JA信号通路调控乌天麻-蜜环菌互作平衡,为天麻共生机制解析及抗病育种奠定重要基础。
    天麻  /  乌天麻  /  TIFY基因家族  /  生物信息学  /  茉莉酸  /  表达模式
    ObjectiveTo systematically analyze the TIFY gene family members in Gastrodia elata f. glauca and explore their potential molecular mechanisms in the interaction between G. elata. f. glauca and Armillaria gallica. Methods Based on the whole-genome data of G. elata f. glauca, bioinformatics methods were used to analyze the system evolution, gene structures, and chromosome distribution. The gene expression characteristicswere detected by qRT-PCR, and the jasmonic acid (JA) content was detected by mass spectrometry. The correlation between gene expression and JA content was further analyzed. Results A total of 30 TIFY family members were identified in G. elata f. glauca, belonging to four subfamilies: TIFY, JAZ, PPD, and ZML. They have highly conserved protein motifs and similar exon/intron structures, and are unevenly distributed on seven chromosomes. The number of conserved homologous genes in G. elata f. glauca is more than that in Arabidopsis thaliana, indicating a specific expansion of the TIFY family. The cis-acting element analysis revealed that the promoter regions of the TIFY family members in G. elata f. glauca are enriched with a large number of hormone response, stress response, and growth and development-related elements. Transcriptome analysis showed that A. gallica infection induced differential expression of 19 TIFY family members in G. elata f. glauca. In the mother tubers, GeJAZ4-3, GeJAZ8, and GeJAZ1-1 were significantly upregulated, and the expression levels of multiple members were significantly positively correlated with JA content, especially the expression level of GeJAZ4-3. Conclusion The TIFY gene family in G. elata f. glauca shows specific expansion. GeJAZ4-3, as a key regulatory factor, mediates the JA signaling pathway to regulate the balance of the interaction between G. elata f. glauca and A. gallica, laying an important foundation for the analysis of the symbiotic mechanism of G. elata and facilitating disease-resistant breeding.
    Gastrodia elata Bl.  /  Gastrodia elata Bl. f. glauca S. ChowTIFY gene family  /  bioinformatics analysis  /  jasmonic acid  /  expression pattern
    王秀雯, 冉丹丹, 欧小宏, 袁青松, 周涛, 江维克, 徐娇. 乌天麻TIFY基因家族的全基因组鉴定及表达模式分析. 中草药, 2026 , 57 (2) : 618 -626 . DOI: 10.7501/j.issn.0253-2670.2026.02.021
    WANG Xiuwen, RAN Dandan, OU Xiaohong, YUAN Qingsong, ZHOU Tao, JIANG Weike, XU Jiao. Genome-wide identification and expression pattern analysis of TIFY gene family in Gastrodia elata f. glauca[J]. Chinese Traditional and Herbal Drugs, 2026 , 57 (2) : 618 -626 . DOI: 10.7501/j.issn.0253-2670.2026.02.021

      国家重点研发计划 (2023YFC3503803); 中央本级重大增减支项目 (2060302)

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    练从龙, 兰金旭, 杨晶凡, 等. 基于冬凌草全长转录组的TIFY基因家族鉴定与表达分析[J]. 福建农业学报, 2024, 39(3):290-301.
    Tao J J, Jia H M, Wu M T, et al. Genome-wide identification and characterization of the TIFY gene family in kiwifruit[J]. BMC Genomics, 2022, 23(1):179.
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    Chen Q, Dai R, Shuang S, et al. Genome-wide investigation of the TIFY transcription factors in alfalfa (Medicago sativa L.):Identification, analysis, and expression[J]. BMC Plant Biol, 2024, 24(1):840.
    Chen L G, Zhang L P, Xiang S Y, et al. The transcription factor WRKY75 positively regulates jasmonate-mediated plant defense to necrotrophic fungal pathogens[J]. J Exp Bot, 2021, 72(4):1473-1489.
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    2种不同金属材料的力学参数

    Family
    属数
    Number of
    genus
    种数
    Number of
    species
    占总种数比例
    Percentage of
    total species (%)

    Genus
    种数
    Number of
    species
    占总种数比例
    Percentage of total
    species (%)
    鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
    小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
    多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
    红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
    小菇属 Mycena 11 5.26
    光柄菇属 Pluteus 5 2.39
    红菇属 Russula 17 8.13
    栓菌属 Trametes 5 2.39
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