Article(id=1198628501545911132, tenantId=1146029695717560320, journalId=1189982191388893191, issueId=1198628499750744699, articleNumber=null, orderNo=null, doi=10.16438/j.0513-4870.2023-0076, pmid=null, cstr=null, oa=null, hot=null, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=research-article, receivedDate=1674921600000, receivedDateStr=2023-01-29, revisedDate=1676822400000, revisedDateStr=2023-02-20, acceptedDate=null, acceptedDateStr=null, onlineDate=1763704904209, onlineDateStr=2025-11-21, pubDate=1683820800000, pubDateStr=2023-05-12, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1763704904209, onlineIssueDateStr=2025-11-21, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1763704904209, creator=13701087609, updateTime=1763704904209, updator=13701087609, issue=Issue{id=1198628499750744699, tenantId=1146029695717560320, journalId=1189982191388893191, year='2023', volume='58', issue='5', pageStart='0', pageEnd='1400', issueExtLink='null', onlineDate='null', pubDate='null', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=-1, specialIssue=null, createTime=1763704903781, creator=13701087609, updateTime=1766137655840, updator=13701087609, preIssue=null, nextIssue=null, ext={EN=IssueExt(id=1208832201509172104, tenantId=1146029695717560320, journalId=1189982191388893191, issueId=1198628499750744699, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1208832201509172105, tenantId=1146029695717560320, journalId=1189982191388893191, issueId=1198628499750744699, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null}, startPage=1267, endPage=1274, ext={EN=ArticleExt(id=1198628501793375069, articleId=1198628501545911132, tenantId=1146029695717560320, journalId=1189982191388893191, language=EN, title=Rapid prediction of G protein-coupled receptor structures using nanoluciferase assay, columnId=1190335348761793317, journalTitle=Acta Pharmaceutica Sinica, columnName=Original Articles, runingTitle=null, highlight=null, articleAbstract=
Using beta-2 adrenergic receptor, 5-hydroxytryptamine and angiotensin Ⅱtype 1 receptor as control, we here established a method for rapid prediction of the initial position amino acids of N-terminal, C-terminal, intracellular loops, extracellular loops and transmembrane (TM) regions in G protein-coupled receptors (GPCRs), and successfully predicted the structure of Mas-related G protein-coupled receptors X3 (MRGPRX3). To achieve this purpose, nanoluciferase (Nluc) was inserted into the different sites of these GPCRs′ sequence by sequence and ligation-independent cloning (SLIC) method, and the luminescence value were measured to distinguish the different parts of GPCRs. The results showed that luminescence values of NLuc luciferase at TM region were less than 100 000, and the values were higher than 1 000 000 at N terminal, C terminal, or extracellular loops and intracellular loops, and the values were between 100 000 and 500 000 at junction. The predicted MRGPRX3 structure was analyzed in detail and was compared with AlphaFold predicted structure. In conclusion, this method could provide useful information of GPCR structure model for the ligand virtual screening, and could provide certain experimental basis for structural pharmacology.
, correspAuthors=Fan YANG, Jiu-yao ZHOU, authorNote=null, correspAuthorsNote=null, copyrightStatement=Copyright ©2023 Acta Pharmaceutica Sinica. All rights reserved., copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, authorCompany=null, fund=null, authors=null, authorsList=Yu-ming ZHUANG, Lu-lu GUO, Guo-xing FANG, Xin LUO, Si-yuan SHEN, Fan YANG, Jiu-yao ZHOU), CN=ArticleExt(id=1198628504490312591, articleId=1198628501545911132, tenantId=1146029695717560320, journalId=1189982191388893191, language=CN, title=利用纳米荧光素酶快速预测G蛋白偶联受体结构, columnId=1190335348896011050, journalTitle=药学学报, columnName=研究论文, runingTitle=null, highlight=null, articleAbstract=
本文以β2-肾上腺素能受体(beta-2 adrenergic receptor, β2-AR)、5-羟色胺(5-hydroxytryptamine, 5-HT)、血管紧张素Ⅱ-1型受体(angiotensin Ⅱ type 1 receptor, AT1R) 为例, 建立可快速预测G蛋白偶联受体(G protein-coupled receptors, GPCRs) N端、C端、胞内环、胞外环、跨膜(transmembrane, TM) 区氨基酸起始位置的方法, 并通过此方法预测Mas相关基因G蛋白偶联受体X3 (Mas-related G protein-coupled receptors X3, MRGPRX3) 的结构。具体操作为利用不依赖序列和连接的克隆方法(sequence and ligation-independent cloning, Slic) 将纳米荧光素酶(nanoluciferase, NLuc) 插入GPCRs的不同位点, 在同一受体表达水平相同的条件下, 检测NLuc插入GPCRs不同位点对于发光值的影响。结果显示, 当NLuc插入GPCRs不同位点时, 检测到的NLuc发光值不同。当NLuc插入N端、C端、胞内环、胞外环等柔性区域时, 发光值在100万以上; 插入TM区域(刚性区域) 时, 发光值在10万以下, 甚至在1万以下; 插在柔性区域与刚性区域的交界处时, 发光值在10万~50万之间, 一般在10万左右。本研究建立了一种可快速确定GPCRs结构的生化方法, 并用此方法成功预测MRGPRX3的结构。此方法能够为配体的虚拟筛选提供有效信息, 为结构药理学提供一定的实验依据。
, correspAuthors=杨帆, 周玖瑶, authorNote=null, correspAuthorsNote=
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viaMrgX receptors, refAbstract=null)], funds=[Fund(id=1198960130382459356, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, awardId=31900936, language=CN, fundingSource=国家自然科学基金资助项目(31900936), fundOrder=null, country=null)], companyList=[AuthorCompany(id=1198960122983707382, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, xref=null, ext=[AuthorCompanyExt(id=1198960122992095990, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, companyId=1198960122983707382, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1. School of Pharmaceutical Sciences, Guangzhou University of Chinese Medicine, Guangzhou 511400, China), AuthorCompanyExt(id=1198960123004678904, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, companyId=1198960122983707382, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.广州中医药大学中药学院, 广东 广州 511400)]), AuthorCompany(id=1198960123122119427, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, xref=null, ext=[AuthorCompanyExt(id=1198960123134702341, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, companyId=1198960123122119427, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2. Shandong University School of Basic Medicine, Jinan 250014, China), AuthorCompanyExt(id=1198960123176645387, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, companyId=1198960123122119427, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2.山东大学基础医学院, 山东 济南 250014)])], figs=[ArticleFig(id=1198960128356610321, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=EN, label=null, caption=null, figureFileSmall=yaHAjsdR+L4UmE7yOWwwsA==, figureFileBig=48dqj7I/FIQ+FJ4afDLV4A==, tableContent=null), ArticleFig(id=1198960128490828057, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=CN, label=Figure 1, caption=
Establishment of the NLuc luminescence assay method. Schematic diagram of the luminescence value of β2-AR-xNLuc (A), 5-HT1A-xNLuc (B) and AT1R-xNLuc (C) detection and NLuc insertion position. NLuc: Nanoluciferase; β2-AR: Beta-2 adrenergic receptor; 5-HT1A: 5-Hydroxytryptamine 1A; AT1R: Angiotensin Ⅱ type 1 receptor; TM: Transmembrane; ICLs: Intracellular loops; ECLs: Extracellular loops , figureFileSmall=yaHAjsdR+L4UmE7yOWwwsA==, figureFileBig=48dqj7I/FIQ+FJ4afDLV4A==, tableContent=null), ArticleFig(id=1198960128646017319, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=EN, label=null, caption=null, figureFileSmall=ntxP2U1KXk0TI9yByhWGIg==, figureFileBig=CK8VSRZEfSRwjz9ZFzbvRA==, tableContent=null), ArticleFig(id=1198960128767652143, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=CN, label=Figure 2, caption=
Summary and application of NLuc experimental methods. A: Schematic diagram of NLuc insertion position corresponding to luminescence value; B: Display of construction sites of MRGPRX3-xNLuc plasmid. Amino acids in the N-terminal, C-terminal and loop regions are represented by blue circles, those in the TM region are represented by red circles, and those in the junction are represented by green circles. MRGPRX3: Mas-related G protein-coupled receptors X3 , figureFileSmall=ntxP2U1KXk0TI9yByhWGIg==, figureFileBig=CK8VSRZEfSRwjz9ZFzbvRA==, tableContent=null), ArticleFig(id=1198960128872509753, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=EN, label=null, caption=null, figureFileSmall=ZfTcxlPjOmEGlibnApvAAA==, figureFileBig=1RKyO8rW6buWSWEugLE3lQ==, tableContent=null), ArticleFig(id=1198960128977367362, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=CN, label=Figure 3, caption=
ELISA results of MRGPRX3-xNLuc expression on cell surface. Mean ± SEM from three independent experiments (n = 3) were performed in triplicates. n.s.: No significance , figureFileSmall=ZfTcxlPjOmEGlibnApvAAA==, figureFileBig=1RKyO8rW6buWSWEugLE3lQ==, tableContent=null), ArticleFig(id=1198960129119973712, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=EN, label=null, caption=null, figureFileSmall=eW89wu/7Iq4NuWhK572uTw==, figureFileBig=eD8exzHfM65p92ldAu+IPA==, tableContent=null), ArticleFig(id=1198960129224831326, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=CN, label=Figure 4, caption=
Detection result of luminescence value of MRGPRX3-xNLuc. Purple means the luminescence value is above a million, blue means the luminescence value is between 100 000 and 500 000, and yellow means the luminescence value is less than 100 000 , figureFileSmall=eW89wu/7Iq4NuWhK572uTw==, figureFileBig=eD8exzHfM65p92ldAu+IPA==, tableContent=null), ArticleFig(id=1198960129329688938, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=EN, label=null, caption=null, figureFileSmall=Rybtfu5uXbI4bqwBf/LqSg==, figureFileBig=SBoGoqNpOsWwsdpuar6dtg==, tableContent=null), ArticleFig(id=1198960129501655417, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=CN, label=Figure 5, caption=
The serpentine graph prediction of MRGPRX3. Purple represents the amino acids in the flexible region, blue represents the amino acids between the flexible region and the rigid region, and yellow represents the amino acids in the rigid region , figureFileSmall=Rybtfu5uXbI4bqwBf/LqSg==, figureFileBig=SBoGoqNpOsWwsdpuar6dtg==, tableContent=null), ArticleFig(id=1198960129728147854, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=EN, label=null, caption=null, figureFileSmall=Y6T4mBfivg6LJ/szOCTFHw==, figureFileBig=RZDjh7NfX6iGn36O/rQm8A==, tableContent=null), ArticleFig(id=1198960129870754210, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=CN, label=Figure 6, caption=
Three-dimensional (3D) representation of P93, I94, V171 and W172 in the MRGPRX3 simulated by AlphaFold , figureFileSmall=Y6T4mBfivg6LJ/szOCTFHw==, figureFileBig=RZDjh7NfX6iGn36O/rQm8A==, tableContent=null), ArticleFig(id=1198960130021749164, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=EN, label=null, caption=null, figureFileSmall=null, figureFileBig=null, tableContent=
| Domain | AlphaFold prediction | NLuc luminescence assay prediction |
| N-terminal | M1-E20 | M1-E20 |
| TM1 | T21-R55 | T21-R55 |
| ICL1 | M56-N59 | M56-N59 |
| TM2 | A60-L87 | A60-L87 |
| ECL1 | I88-H92 | I88-H92, P93*, I94* |
| TM3 | P93-I124 | S95-I124 |
| ICL2 | L125-Y137 | L125-Y137 |
| TM4 | L138-F163 | L138-F163 |
| ECL2 | L164-S170 | L164-S170, V171*, W172* |
| TM5 | V171-L203 | C173-L203 |
| ICL3 | C204-L211 | C204-L211 |
| TM6 | T212-F239 | T212-F239 |
| ECL3 | S240-K247 | S240-K247 |
| TM7 | W248-A294 | W248-A294 |
| C-terminal | L295-Q322 | L295-Q322 |
), ArticleFig(id=1198960130160161215, tenantId=1146029695717560320, journalId=1189982191388893191, articleId=1198628501545911132, language=CN, label=Table 1, caption=
Comparison of AlphaFold prediction and the method established in this manuscript for predicting MRGPRX3. *The amino acids differed between the AlphaFold prediction and the NLuc luminescence assay prediction
, figureFileSmall=null, figureFileBig=null, tableContent=
| Domain | AlphaFold prediction | NLuc luminescence assay prediction |
| N-terminal | M1-E20 | M1-E20 |
| TM1 | T21-R55 | T21-R55 |
| ICL1 | M56-N59 | M56-N59 |
| TM2 | A60-L87 | A60-L87 |
| ECL1 | I88-H92 | I88-H92, P93*, I94* |
| TM3 | P93-I124 | S95-I124 |
| ICL2 | L125-Y137 | L125-Y137 |
| TM4 | L138-F163 | L138-F163 |
| ECL2 | L164-S170 | L164-S170, V171*, W172* |
| TM5 | V171-L203 | C173-L203 |
| ICL3 | C204-L211 | C204-L211 |
| TM6 | T212-F239 | T212-F239 |
| ECL3 | S240-K247 | S240-K247 |
| TM7 | W248-A294 | W248-A294 |
| C-terminal | L295-Q322 | L295-Q322 |
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